AT5G15540 (SCC2, ATSCC2, EMB2773)

Aliases : SCC2, ATSCC2, EMB2773

Description : PHD finger family protein

Gene families : OG0005074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005074_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G15540

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00053630	SCC2, ATSCC2,...	Cell cycle.mitosis and meiosis.sister chromatid...	0.11	OrthoFinder output from all 47 species
Adi_g086269	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g04894	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g16239	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.09	OrthoFinder output from all 47 species
Als_g08111	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g31097	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene15027.t1	SCC2, ATSCC2,...	adherin *(SCC2) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15029.t1	SCC2, ATSCC2,...	adherin *(SCC2) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.14G000800.1	SCC2, ATSCC2,...	adherin *(SCC2) & original description: pacid=50634323...	0.11	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001085.24	SCC2, ATSCC2, EMB2773	Cell cycle.mitosis and meiosis.sister chromatid...	0.03	OrthoFinder output from all 47 species
Cre06.g278266	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g39401	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.12	OrthoFinder output from all 47 species
Dde_g02409	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06224	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01011514001	SCC2, ATSCC2, EMB2773	Cell cycle.mitosis and meiosis.sister chromatid...	0.12	OrthoFinder output from all 47 species
Gb_05661	SCC2, ATSCC2, EMB2773	adherin (SCC2)	0.07	OrthoFinder output from all 47 species
Gb_41687	SCC2, ATSCC2, EMB2773	adherin (SCC2)	0.07	OrthoFinder output from all 47 species
LOC_Os07g01940.1	SCC2, ATSCC2,...	adherin (SCC2)	0.08	OrthoFinder output from all 47 species
Len_g24640	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g05042	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.09	OrthoFinder output from all 47 species
MA_10437214g0020	SCC2, ATSCC2, EMB2773	adherin (SCC2)	0.12	OrthoFinder output from all 47 species
MA_97686g0010	SCC2, ATSCC2, EMB2773	adherin (SCC2)	0.02	OrthoFinder output from all 47 species
Mp4g10640.1	SCC2, ATSCC2, EMB2773	adherin (SCC2)	0.06	OrthoFinder output from all 47 species
Msp_g24576	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g28623	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28888	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g08021	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g05355	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015105	SCC2, ATSCC2, EMB2773	not classified & original description: CDS=1-927	0.07	OrthoFinder output from all 47 species
Sam_g26001	No alias	adherin *(SCC2) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g48907	No alias	adherin *(SCC2) & original description: none	0.16	OrthoFinder output from all 47 species
Smo440913	SCC2, ATSCC2, EMB2773	Cell cycle.mitosis and meiosis.sister chromatid...	0.13	OrthoFinder output from all 47 species
Spa_g04412	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g05250	SCC2, ATSCC2, EMB2773	adherin *(SCC2) & original description: none	0.07	OrthoFinder output from all 47 species
Zm00001e011569_P001	SCC2, ATSCC2,...	adherin (SCC2)	0.09	OrthoFinder output from all 47 species
Zm00001e032695_P001	SCC2, ATSCC2,...	adherin (SCC2)	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	IMP	Interproscan
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IMP	Interproscan
BP	GO:0009880	embryonic pattern specification	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	None	Extended
BP	GO:0010072	primary shoot apical meristem specification	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010431	seed maturation	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016926	protein desumoylation	RCA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034508	centromere complex assembly	IMP	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045595	regulation of cell differentiation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048316	seed development	RCA	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050665	hydrogen peroxide biosynthetic process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051177	meiotic sister chromatid cohesion	IMP	Interproscan
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051301	cell division	RCA	Interproscan
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090421	embryonic meristem initiation	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048497	maintenance of floral organ identity	IEP	HCCA
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0055047	generative cell mitosis	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0080092	regulation of pollen tube growth	IEP	HCCA
BP	GO:0090213	regulation of radial pattern formation	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090700	maintenance of plant organ identity	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
BP	GO:0140014	mitotic nuclear division	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR026003	Cohesin_HEAT	895	936
IPR024986	Nipped-B_C	1388	1587

External Links

No external refs found!

AT5G15540 (SCC2, ATSCC2, EMB2773)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation