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  5. AT5G15270

AT5G15270


Description : RNA-binding KH domain-containing protein


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G15270
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Adi_g008962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g028830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054731 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075983 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0194.g057204 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Dcu_g10791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g24061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01553 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_32436 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g13470.1 LOC_Os01g13470 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
LOC_Os06g23460.1 LOC_Os06g23460 RNA-binding KH domain-containing protein RCF3... 0.06 OrthoFinder output from all 47 species
LOC_Os08g10030.1 LOC_Os08g10030 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g21684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g010840.2.1 Solyc11g010840 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g24248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001046 core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010452 histone H3-K36 methylation IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 371 438
IPR004088 KH_dom_type_1 53 104
IPR004088 KH_dom_type_1 288 335
IPR004088 KH_dom_type_1 149 216
No external refs found!