AT5G14170 (CHC1)

Aliases : CHC1

Description : SWIB/MDM2 domain superfamily protein

Gene families : OG0004548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004548_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G14170

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os04g31320.1	CHC1, LOC_Os04g31320	component BAF60 of chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
Lfl_g04713	CHC1	SMARCD component *(SWP73) of chromatin remodeling...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IMP	Interproscan
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	RCA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010224	response to UV-B	IEP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048364	root development	IMP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008970	phospholipase A1 activity	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009590	detection of gravity	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009660	amyloplast organization	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0009959	negative gravitropism	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0035061	interchromatin granule	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0048235	pollen sperm cell differentiation	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003121	SWIB_MDM2_domain	318	389

External Links

No external refs found!

AT5G14170 (CHC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation