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  5. AT5G10390

AT5G10390


Description : Histone superfamily protein


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G10390
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from all 47 species
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from all 47 species
Adi_g014653 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014654 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08007 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12785 No alias histone H3 variant *(CENH3) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g30174 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g43453 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g00368 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19848 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene01931.t1 Aspi01Gene01931 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42452.t1 Aspi01Gene42452 histone H3 variant *(CENH3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58554.t1 Aspi01Gene58554 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G075200.1 Ceric.06G075200 histone *(H3) & original description: pacid=50619967... 0.04 OrthoFinder output from all 47 species
Ceric.10G013500.1 Ceric.10G013500 histone *(H3) & original description: pacid=50612923... 0.06 OrthoFinder output from all 47 species
Ceric.10G015500.1 Ceric.10G015500 histone *(H3) & original description: pacid=50612308... 0.04 OrthoFinder output from all 47 species
Ceric.12G022300.1 Ceric.12G022300 histone *(H3) & original description: pacid=50601599... 0.04 OrthoFinder output from all 47 species
Ceric.14G025000.1 Ceric.14G025000 histone *(H3) & original description: pacid=50634383... 0.04 OrthoFinder output from all 47 species
Ceric.19G072200.1 Ceric.19G072200 histone *(H3) & original description: pacid=50576221... 0.06 OrthoFinder output from all 47 species
Ceric.19G072300.1 Ceric.19G072300 histone *(H3) & original description: pacid=50576158... 0.04 OrthoFinder output from all 47 species
Ceric.1Z177000.1 Ceric.1Z177000 histone *(H3) & original description: pacid=50628432... 0.06 OrthoFinder output from all 47 species
Ceric.22G049100.1 Ceric.22G049100 histone H3 variant *(CENH3) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.27G024400.1 Ceric.27G024400 histone *(H3) & original description: pacid=50605092... 0.03 OrthoFinder output from all 47 species
Ceric.27G025100.1 Ceric.27G025100 histone *(H3) & original description: pacid=50605832... 0.05 OrthoFinder output from all 47 species
Ceric.27G025200.1 Ceric.27G025200 histone *(H3) & original description: pacid=50606238... 0.04 OrthoFinder output from all 47 species
Ceric.27G026100.1 Ceric.27G026100 histone *(H3) & original description: pacid=50605944... 0.04 OrthoFinder output from all 47 species
Ceric.27G029000.1 Ceric.27G029000 histone *(H3) & original description: pacid=50605580... 0.06 OrthoFinder output from all 47 species
Ceric.27G029300.1 Ceric.27G029300 histone *(H3) & original description: pacid=50605405... 0.06 OrthoFinder output from all 47 species
Ceric.27G029400.1 Ceric.27G029400 histone *(H3) & original description: pacid=50605419... 0.04 OrthoFinder output from all 47 species
Ceric.30G057000.1 Ceric.30G057000 histone *(H3) & original description: pacid=50609365... 0.04 OrthoFinder output from all 47 species
Ceric.37G016300.1 Ceric.37G016300 histone *(H3) & original description: pacid=50616425... 0.04 OrthoFinder output from all 47 species
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g265500 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre16.g649900 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.07 OrthoFinder output from all 47 species
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from all 47 species
Dac_g02480 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04344 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12416 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g27747 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01832 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47570 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.14 OrthoFinder output from all 47 species
GSVIVT01027073001 HTR12, CENH3 Cell cycle.mitosis and meiosis.chromosome... 0.09 OrthoFinder output from all 47 species
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.06 OrthoFinder output from all 47 species
Gb_23769 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_27618 No alias histone (H3) 0.12 OrthoFinder output from all 47 species
Gb_29026 No alias histone (H3) 0.07 OrthoFinder output from all 47 species
Gb_29027 No alias histone (H3) 0.1 OrthoFinder output from all 47 species
Gb_30564 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Gb_36661 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Gb_40804 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
LOC_Os01g64640.1 LOC_Os01g64640 histone (H3) 0.06 OrthoFinder output from all 47 species
LOC_Os03g27310.2 LOC_Os03g27310 histone (H3) 0.03 OrthoFinder output from all 47 species
LOC_Os04g34240.1 LOC_Os04g34240 histone (H3) 0.05 OrthoFinder output from all 47 species
LOC_Os05g36280.1 LOC_Os05g36280 histone (H3) 0.13 OrthoFinder output from all 47 species
LOC_Os05g41080.1 LOC_Os05g41080 histone H3 variant (CENH3) 0.07 OrthoFinder output from all 47 species
LOC_Os06g04030.1 LOC_Os06g04030 histone (H3) 0.05 OrthoFinder output from all 47 species
LOC_Os06g06460.1 LOC_Os06g06460 histone (H3) 0.03 OrthoFinder output from all 47 species
LOC_Os06g06510.1 LOC_Os06g06510 histone (H3) 0.18 OrthoFinder output from all 47 species
LOC_Os11g05730.1 LOC_Os11g05730 histone (H3) 0.06 OrthoFinder output from all 47 species
Len_g00883 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04468 No alias histone *(H3) & original description: none 0.09 OrthoFinder output from all 47 species
Len_g05015 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g06032 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26206 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g45428 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432805g0020 No alias histone (H3) 0.05 OrthoFinder output from all 47 species
MA_113838g0010 No alias histone (H3) 0.07 OrthoFinder output from all 47 species
MA_17527g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_197719g0010 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
MA_210354g0010 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
MA_24261g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_350032g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_356208g0010 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
MA_475294g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_561217g0010 No alias histone (H3) 0.05 OrthoFinder output from all 47 species
MA_56411g0010 No alias histone (H3) 0.09 OrthoFinder output from all 47 species
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.06 OrthoFinder output from all 47 species
Mp3g07730.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp3g09090.1 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Mp7g10730.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g16200.1 No alias histone (H3) 0.05 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Msp_g36081 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07789 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c22_8680V3.1 Pp3c22_8680 Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c24_13230V3.1 Pp3c24_13230 Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Ppi_g60005 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22036 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Smo171192 No alias Cell cycle.mitosis and meiosis.chromosome... 0.02 OrthoFinder output from all 47 species
Smo269004 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Smo438193 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Solyc01g074000.3.1 Solyc01g074000 histone (H3) 0.16 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.14 OrthoFinder output from all 47 species
Solyc01g080600.4.1 Solyc01g080600 histone (H3) 0.22 OrthoFinder output from all 47 species
Solyc01g086820.4.1 Solyc01g086820 histone (H3) 0.21 OrthoFinder output from all 47 species
Solyc01g095650.4.1 HTR12, CENH3,... histone H3 variant (CENH3) 0.04 OrthoFinder output from all 47 species
Solyc02g077480.1.1 Solyc02g077480 histone (H3) 0.17 OrthoFinder output from all 47 species
Solyc05g051500.4.1 Solyc05g051500 histone (H3) 0.06 OrthoFinder output from all 47 species
Solyc10g008910.1.1 Solyc10g008910 histone (H3) 0.11 OrthoFinder output from all 47 species
Solyc11g010230.2.1 Solyc11g010230 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc12g056540.1.1 Solyc12g056540 histone (H3) 0.06 OrthoFinder output from all 47 species
Spa_g04339 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18210 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g33395 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33705 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g42522 No alias histone *(H3) & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g52114 No alias histone *(H3) & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g52464 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56118 No alias histone *(H3) & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04797 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09717 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008155_P001 Zm00001e008155 histone (H3) 0.05 OrthoFinder output from all 47 species
Zm00001e008160_P001 Zm00001e008160 histone (H3) 0.09 OrthoFinder output from all 47 species
Zm00001e014760_P001 Zm00001e014760 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e016861_P001 Zm00001e016861 histone (H3) 0.09 OrthoFinder output from all 47 species
Zm00001e018263_P001 Zm00001e018263 histone (H3) 0.06 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.1 OrthoFinder output from all 47 species
Zm00001e036599_P001 Zm00001e036599 histone (H3) 0.05 OrthoFinder output from all 47 species
Zm00001e040856_P001 Zm00001e040856 histone (H3) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0016048 detection of temperature stimulus IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048653 anther development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!