AT5G08020 (RPA70B, ATRPA70B)


Aliases : RPA70B, ATRPA70B

Description : RPA70-kDa subunit B


Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G08020
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00046110 RPA70B,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.16 OrthoFinder output from all 47 species
Ala_g25088 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Als_g07217 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Als_g08320 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Aop_g21131 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.11 OrthoFinder output from all 47 species
Aspi01Gene25029.t1 RPA70D,... component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Aspi01Gene32891.t1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.12 OrthoFinder output from all 47 species
Ceric.18G083500.1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.15 OrthoFinder output from all 47 species
Cre16.g651000 RPA70D, ATRPA70D Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.06 OrthoFinder output from all 47 species
Dac_g20470 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.09 OrthoFinder output from all 47 species
Dcu_g11388 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.12 OrthoFinder output from all 47 species
GSVIVT01007849001 RPA70B, ATRPA70B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.14 OrthoFinder output from all 47 species
Gb_17349 RPA70B, ATRPA70B component RPA1 of single-stranded-DNA binding RPA... 0.16 OrthoFinder output from all 47 species
LOC_Os03g11540.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.18 OrthoFinder output from all 47 species
Len_g04778 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.1 OrthoFinder output from all 47 species
Len_g11233 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Len_g48997 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Lfl_g30854 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
MA_10308567g0040 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.07 OrthoFinder output from all 47 species
MA_10327014g0020 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
MA_10331305g0010 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
MA_10356314g0010 No alias Replication protein A 70 kDa DNA-binding subunit B... 0.02 OrthoFinder output from all 47 species
MA_10393806g0010 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.05 OrthoFinder output from all 47 species
Mp2g17030.1 RPA70D, ATRPA70D component RPA1 of single-stranded-DNA binding RPA... 0.15 OrthoFinder output from all 47 species
Msp_g06104 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.13 OrthoFinder output from all 47 species
Nbi_g08948 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Pp3c1_20770V3.1 RPA70D,... RPA70-kDa subunit B 0.02 OrthoFinder output from all 47 species
Ppi_g40052 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.09 OrthoFinder output from all 47 species
Solyc03g115050.3.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.13 OrthoFinder output from all 47 species
Spa_g41654 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.12 OrthoFinder output from all 47 species
Tin_g07108 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Zm00001e000841_P002 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.12 OrthoFinder output from all 47 species
Zm00001e038720_P001 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000724 double-strand break repair via homologous recombination RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006260 DNA replication ISS Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-templated DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006281 DNA repair TAS Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0009555 pollen development RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010224 response to UV-B IMP Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle RCA Interproscan
BP GO:0016444 somatic cell DNA recombination RCA Interproscan
BP GO:0016458 obsolete gene silencing RCA Interproscan
BP GO:0031047 RNA-mediated gene silencing RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP HCCA
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0000400 four-way junction DNA binding IEP HCCA
MF GO:0000403 Y-form DNA binding IEP HCCA
MF GO:0000404 heteroduplex DNA loop binding IEP HCCA
MF GO:0000406 double-strand/single-strand DNA junction binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006279 premeiotic DNA replication IEP HCCA
BP GO:0006290 pyrimidine dimer repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006311 meiotic gene conversion IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0007088 regulation of mitotic nuclear division IEP HCCA
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP HCCA
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009934 regulation of meristem structural organization IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
CC GO:0010369 chromocenter IEP HCCA
BP GO:0010520 regulation of reciprocal meiotic recombination IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0010965 regulation of mitotic sister chromatid separation IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0031577 spindle checkpoint signaling IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
MF GO:0032137 guanine/thymine mispair binding IEP HCCA
MF GO:0032138 single base insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032301 MutSalpha complex IEP HCCA
CC GO:0032302 MutSbeta complex IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0033046 negative regulation of sister chromatid segregation IEP HCCA
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP HCCA
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP HCCA
BP GO:0033260 nuclear DNA replication IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0035822 gene conversion IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0040020 regulation of meiotic nuclear division IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0045128 negative regulation of reciprocal meiotic recombination IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045835 negative regulation of meiotic nuclear division IEP HCCA
BP GO:0045839 negative regulation of mitotic nuclear division IEP HCCA
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP HCCA
BP GO:0045910 negative regulation of DNA recombination IEP HCCA
BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051447 negative regulation of meiotic cell cycle IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0051784 negative regulation of nuclear division IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0051985 negative regulation of chromosome segregation IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071173 spindle assembly checkpoint signaling IEP HCCA
BP GO:0071174 mitotic spindle checkpoint signaling IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:1905818 regulation of chromosome separation IEP HCCA
BP GO:1905819 negative regulation of chromosome separation IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 170 256
IPR007199 Rep_factor-A_N 5 104
IPR013955 Rep_factor-A_C 447 592
IPR031657 REPA_OB_2 287 384
No external refs found!