AT5G07420

Description : Pectin lyase-like superfamily protein

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G07420
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00007p00264370	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.06	OrthoFinder output from all 47 species
AMTR_s00027p00247950	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
AMTR_s00106p00092510	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
AT5G07430	No alias	Pectin lyase-like superfamily protein	0.08	OrthoFinder output from all 47 species
AT5G61680	No alias	Pectin lyase-like superfamily protein	0.05	OrthoFinder output from all 47 species
Adi_g011343	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g046688	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g10289	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g12748	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17897	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18114	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g19093	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g37035	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g38864	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g39532	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g40489	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g16581	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g25188	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g10592	No alias	pectin methylesterase & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g11491	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene59345.t1	Aspi01Gene59345	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0004.g008437	No alias	pectin methylesterase & original description: CDS=79-1257	0.03	OrthoFinder output from all 47 species
Azfi_s0033.g024992	No alias	pectin methylesterase & original description: CDS=226-1431	0.05	OrthoFinder output from all 47 species
Azfi_s0040.g026612	No alias	pectin methylesterase & original description: CDS=139-1269	0.04	OrthoFinder output from all 47 species
Azfi_s0055.g033955	No alias	pectin methylesterase & original description: CDS=387-1493	0.04	OrthoFinder output from all 47 species
Azfi_s0103.g044651	No alias	pectin methylesterase & original description: CDS=1-1083	0.03	OrthoFinder output from all 47 species
Azfi_s0648.g080900	No alias	pectin methylesterase & original description: CDS=62-1303	0.03	OrthoFinder output from all 47 species
Azfi_s1046.g096024	No alias	not classified & original description: CDS=62-952	0.03	OrthoFinder output from all 47 species
Cba_g11546	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34624	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.10G071300.1	Ceric.10G071300	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.11G007100.1	Ceric.11G007100	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.11G007600.1	Ceric.11G007600	pectin methylesterase & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.11G007900.1	Ceric.11G007900	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.13G037000.1	Ceric.13G037000	pectin methylesterase & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.13G037800.1	Ceric.13G037800	pectin methylesterase & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g05020	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g07534	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g09998	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g11068	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g17627	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g28954	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g51244	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g20873	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09802	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12393	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17111	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Gb_23209	No alias	pectin methylesterase	0.04	OrthoFinder output from all 47 species
LOC_Os01g19440.1	LOC_Os01g19440	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os01g53990.1	LOC_Os01g53990	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os05g44600.1	LOC_Os05g44600	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Len_g04249	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g07516	No alias	pectin methylesterase & original description: none	0.05	OrthoFinder output from all 47 species
Len_g12523	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Len_g13333	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g09832	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g15828	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g01420.1	No alias	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Mp5g03920.1	No alias	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Mp5g03930.1	No alias	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Nbi_g03614	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g07458	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g08012	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g11750	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13021	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g24244	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g20425	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g26065	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g27386	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29702	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30829	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05067	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14779	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18465	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g24799	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g25901	No alias	pectin methylesterase & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g29894	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g31507	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g63851	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004950	No alias	pectin methylesterase & original description: CDS=716-1846	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005949	No alias	pectin methylesterase & original description: CDS=175-1425	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015086	No alias	pectin methylesterase & original description: CDS=460-1611	0.03	OrthoFinder output from all 47 species
Sam_g36158	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
Spa_g11007	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29378	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49578	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g49902	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g54581	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g54582	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g20547	No alias	pecTin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g35486	No alias	pecTin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e002891_P001	Zm00001e002891	pectin methylesterase	0.09	OrthoFinder output from all 47 species
Zm00001e007306_P001	Zm00001e007306	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Zm00001e029074_P001	Zm00001e029074	pectin methylesterase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004602	glutathione peroxidase activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004623	phospholipase A2 activity	IEP	HCCA
MF	GO:0005451	obsolete monoatomic cation:proton antiporter activity	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009828	plant-type cell wall loosening	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	67	351

External Links

No external refs found!

AT5G07420

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation