AT5G04390

Description : C2H2-type zinc finger family protein

Gene families : OG0000238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G04390

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00070p00194870	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00106p00120810	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.07	OrthoFinder output from all 47 species
AT5G61470	No alias	C2H2-like zinc finger protein	0.04	OrthoFinder output from all 47 species
Adi_g032166	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.02	OrthoFinder output from all 47 species
Als_g51311	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g61144	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.02	OrthoFinder output from all 47 species
Azfi_s0034.g025422	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Azfi_s0577.g078251	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.04	OrthoFinder output from all 47 species
Cba_g24559	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Cba_g37408	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.02	OrthoFinder output from all 47 species
Ceric.13G042600.1	Ceric.13G042600	C2H2-type subclass ZAT transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g15214	AZF2, ZF2	C2H2-type subclass ZAT transcription factor & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01023887001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
GSVIVT01037364001	No alias	Zinc finger protein ZAT2 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_16419	No alias	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Gb_23552	No alias	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os02g44120.1	LOC_Os02g44120	C2H2 zinc finger transcription factor	0.1	OrthoFinder output from all 47 species
LOC_Os03g32220.1	CZF2, ZAT6,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os03g55540.1	CZF2, ZAT6,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os04g08060.1	LOC_Os04g08060	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os04g46670.1	LOC_Os04g46670	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
LOC_Os10g40660.1	LOC_Os10g40660	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Len_g33794	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g07410	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_23050g0010	No alias	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Msp_g31642	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.02	OrthoFinder output from all 47 species
Msp_g35114	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Ppi_g47413	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Sam_g34663	No alias	C2H2-type subclass ZAT transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g35489	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.02	OrthoFinder output from all 47 species
Solyc01g090830.2.1	Solyc01g090830	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Solyc01g090840.3.1	Solyc01g090840	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc02g088670.1.1	Solyc02g088670	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc05g055500.1.1	Solyc05g055500	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Solyc06g005180.1.1	Solyc06g005180	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc06g060740.3.1	Solyc06g060740	C2H2 zinc finger transcription factor	0.01	OrthoFinder output from all 47 species
Spa_g37939	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Spa_g38932	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Spa_g57323	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Tin_g21129	No alias	regulatory protein *(DAZ) of male germ cell division &...	0.03	OrthoFinder output from all 47 species
Zm00001e001253_P001	Zm00001e001253	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e002344_P001	Zm00001e002344	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e006181_P001	Zm00001e006181	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e011983_P001	CZF2, ZAT6,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e028784_P001	Zm00001e028784	C2H2 zinc finger transcription factor	0.01	OrthoFinder output from all 47 species
Zm00001e035423_P001	AZF1, ZF1, Zm00001e035423	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e038464_P001	Zm00001e038464	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e041518_P001	Zm00001e041518	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005451	obsolete monoatomic cation:proton antiporter activity	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0006885	regulation of pH	IEP	HCCA
BP	GO:0010311	lateral root formation	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051017	actin filament bundle assembly	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0061572	actin filament bundle organization	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G04390

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation