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  5. AT5G02590

AT5G02590


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0001966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001966_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G02590
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Adi_g024055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G016800.1 Ceric.04G016800 not classified & original description: pacid=50631515... 0.03 OrthoFinder output from all 47 species
Ceric.26G072200.1 Ceric.26G072200 not classified & original description: pacid=50599869... 0.03 OrthoFinder output from all 47 species
Ehy_g03725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432896g0010 No alias protein SLOW GREEN 1, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ppi_g14936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0009543 chloroplast thylakoid lumen ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003991 acetylglutamate kinase activity IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006591 ornithine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
MF GO:0015099 nickel cation transmembrane transporter activity IEP HCCA
BP GO:0015675 nickel cation transport IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
MF GO:0034618 arginine binding IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0042450 arginine biosynthetic process via ornithine IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!