AT4G39070

Description : B-box zinc finger family protein

Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G39070
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00182p00043350	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AT4G38960	No alias	B-box type zinc finger family protein	0.04	OrthoFinder output from all 47 species
Adi_g081465	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11974	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene09321.t1	Aspi01Gene09321	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62651.t2	Aspi01Gene62651	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os04g45690.1	LOC_Os04g45690	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
LOC_Os05g11510.1	LZF1, STH3,...	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Len_g59223	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010219	STO	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018285	STO	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc12g089240.2.1	STH2, Solyc12g089240	transcription factor (BBX-DBB)	0.05	OrthoFinder output from all 47 species
Spa_g29582	STH	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007388_P002	STH2, Zm00001e007388	transcription factor (BBX-DBB)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009741	response to brassinosteroid	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080167	response to karrikin	IEP	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0009061	anaerobic respiration	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	55	93

External Links

No external refs found!

AT4G39070

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation