AT4G38430 (ATROPGEF1, ROPGEF1)

Aliases : ATROPGEF1, ROPGEF1

Description : rho guanyl-nucleotide exchange factor 1

Gene families : OG0000396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G38430

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00182400	ATROPGEF1,...	Multi-process regulation.Rop GTPase regulatory...	0.03	OrthoFinder output from all 47 species
Adi_g024149	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Ala_g24240	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Aop_g08558	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene47160.t1	ATROPGEF1,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Azfi_s0084.g038941	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.05	OrthoFinder output from all 47 species
Cba_g71087	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Ceric.19G021400.1	ROPGEF7,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Dac_g00928	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Dac_g07468	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Dcu_g04886	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.05	OrthoFinder output from all 47 species
GSVIVT01023897001	ATROPGEF1, ROPGEF1	Multi-process regulation.Rop GTPase regulatory...	0.08	OrthoFinder output from all 47 species
GSVIVT01036908001	ROPGEF14, ATROPGEF14	Multi-process regulation.Rop GTPase regulatory...	0.04	OrthoFinder output from all 47 species
LOC_Os02g47420.3	ROPGEF14,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	OrthoFinder output from all 47 species
LOC_Os09g37270.1	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	OrthoFinder output from all 47 species
Len_g19392	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Lfl_g01871	ROPGEF8, ATROPGEF8	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Lfl_g06173	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Nbi_g03786	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Ore_g19259	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Pir_g14467	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.05	OrthoFinder output from all 47 species
Ppi_g02185	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Sam_g11202	No alias	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Sam_g27297	No alias	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Sam_g28512	No alias	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Solyc01g111930.4.1	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.07	OrthoFinder output from all 47 species
Solyc04g082110.4.1	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.05	OrthoFinder output from all 47 species
Spa_g08979	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Spa_g12272	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Spa_g12484	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Spa_g30949	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Tin_g02831	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Tin_g05160	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.08	OrthoFinder output from all 47 species
Zm00001e010284_P002	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.11	OrthoFinder output from all 47 species
Zm00001e034952_P003	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0007389	pattern specification process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008356	asymmetric cell division	RCA	Interproscan
BP	GO:0008361	regulation of cell size	RCA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009825	multidimensional cell growth	RCA	Interproscan
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IMP	Interproscan
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	RCA	Interproscan
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010015	root morphogenesis	RCA	Interproscan
BP	GO:0010075	regulation of meristem growth	RCA	Interproscan
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	None	Extended
BP	GO:0010817	regulation of hormone levels	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
CC	GO:0016324	apical plasma membrane	IDA	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
BP	GO:0040007	growth	RCA	Interproscan
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051301	cell division	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080092	regulation of pollen tube growth	IGI	Interproscan
BP	GO:0090066	regulation of anatomical structure size	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005512	PRONE_dom	89	456

External Links

No external refs found!

AT4G38430 (ATROPGEF1, ROPGEF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation