AT4G37650 (SHR, SGR7)

Aliases : SHR, SGR7

Description : GRAS family transcription factor

Gene families : OG0003562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003562_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G37650

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00182770	SHR, SGR7,...	External stimuli response.gravity.sensing and...	0.07	OrthoFinder output from all 47 species
AMTR_s00086p00066190	SHR, SGR7,...	External stimuli response.gravity.sensing and...	0.05	OrthoFinder output from all 47 species
Adi_g089021	SHR, SGR7	gravity signalling transcription factor *(SHR) &...	0.02	OrthoFinder output from all 47 species
Aob_g17904	SHR, SGR7	gravity signalling transcription factor *(SHR) &...	0.04	OrthoFinder output from all 47 species
Aob_g31871	SHR, SGR7	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15940.t1	SHR, SGR7,...	gravity signalling transcription factor *(SHR) &...	0.03	OrthoFinder output from all 47 species
Ceric.38G001000.1	SHR, SGR7,...	gravity signalling transcription factor *(SHR) &...	0.04	OrthoFinder output from all 47 species
Dac_g14496	SHR, SGR7	gravity signalling transcription factor *(SHR) &...	0.03	OrthoFinder output from all 47 species
Dde_g29734	SHR, SGR7	gravity signalling transcription factor *(SHR) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01000107001	SHR, SGR7	External stimuli response.gravity.sensing and...	0.04	OrthoFinder output from all 47 species
GSVIVT01004104001	SHR, SGR7	External stimuli response.gravity.sensing and...	0.03	OrthoFinder output from all 47 species
LOC_Os03g31880.1	SHR, SGR7, LOC_Os03g31880	transcription factor (GRAS). SHR gravity signalling...	0.06	OrthoFinder output from all 47 species
LOC_Os07g39820.1	SHR, SGR7, LOC_Os07g39820	transcription factor (GRAS). SHR gravity signalling...	0.05	OrthoFinder output from all 47 species
Ppi_g40178	SHR, SGR7	gravity signalling transcription factor *(SHR) &...	0.02	OrthoFinder output from all 47 species
Solyc02g092370.1.1	SHR, SGR7, Solyc02g092370	transcription factor (GRAS). SHR gravity signalling...	0.06	OrthoFinder output from all 47 species
Solyc08g014030.1.1	SHR, SGR7, Solyc08g014030	transcription factor (GRAS). SHR gravity signalling...	0.03	OrthoFinder output from all 47 species
Zm00001e002085_P001	SHR, SGR7, Zm00001e002085	transcription factor (GRAS). SHR gravity signalling...	0.05	OrthoFinder output from all 47 species
Zm00001e035411_P001	SHR, SGR7, Zm00001e035411	transcription factor (GRAS). SHR gravity signalling...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008356	asymmetric cell division	IMP	Interproscan
BP	GO:0009956	radial pattern formation	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	NAS	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IDA	Interproscan
BP	GO:0045786	negative regulation of cell cycle	None	Extended
BP	GO:0045930	negative regulation of mitotic cell cycle	IMP	Interproscan
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0051301	cell division	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0055065	metal ion homeostasis	None	Extended
BP	GO:0055072	iron ion homeostasis	IMP	Interproscan
BP	GO:0055076	transition metal ion homeostasis	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	145	529

External Links

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AT4G37650 (SHR, SGR7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation