AT4G36260 (SRS2, STY2)

Aliases : SRS2, STY2

Description : Lateral root primordium (LRP) protein-related

Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G36260
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
Adi_g045684	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g061023	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g069569	LRP1	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g077130	SRS1, STY1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079599	SRS1, STY1	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g106034	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17440	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g46734	SRS7	SRS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g23682	SRS1, STY1	SRS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g27015	SRS1, STY1	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene30272.t1	SHI, Aspi01Gene30272	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.25G035200.1	SRS1, STY1,...	SRS-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.32G058400.1	SRS1, STY1,...	SRS-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g13440	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g16665	SRS1, STY1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g47477	SHI	SRS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01009812001	SRS5	RNA biosynthesis.transcriptional activation.SRS...	0.07	OrthoFinder output from all 47 species
GSVIVT01024206001	SHI	RNA biosynthesis.transcriptional activation.SRS...	0.03	OrthoFinder output from all 47 species
LOC_Os01g72490.1	LRP1, LOC_Os01g72490	transcription factor (SRS)	0.04	OrthoFinder output from all 47 species
LOC_Os05g32070.1	LRP1, LOC_Os05g32070	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Len_g31120	SHI	SRS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_2299g0010	LRP1	transcription factor (SRS)	0.02	OrthoFinder output from all 47 species
Mp3g19510.1	SHI	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Pnu_g14706	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g084680.3.1	SRS1, STY1,...	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Solyc10g054070.1.1	SRS5, Solyc10g054070	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Tin_g29778	SRS1, STY1	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g30774	SHI	SRS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004006_P001	SHI, Zm00001e004006	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Zm00001e010227_P001	SRS1, STY1,...	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Zm00001e013256_P002	SHI, Zm00001e013256	transcription factor (SRS)	0.02	OrthoFinder output from all 47 species
Zm00001e024681_P001	SHI, Zm00001e024681	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Zm00001e026854_P001	SHI, Zm00001e026854	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Zm00001e028304_P001	LRP1, Zm00001e028304	transcription factor (SRS)	0.04	OrthoFinder output from all 47 species
Zm00001e030189_P001	SHI, Zm00001e030189	transcription factor (SRS)	0.03	OrthoFinder output from all 47 species
Zm00001e031567_P001	LRP1, Zm00001e031567	transcription factor (SRS)	0.05	OrthoFinder output from all 47 species
Zm00001e034798_P001	SRS1, STY1,...	transcription factor (SRS)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	NAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	None	Extended
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	NAS	Interproscan
BP	GO:0009944	polarity specification of adaxial/abaxial axis	RCA	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	IGI	Interproscan
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
BP	GO:0010252	auxin homeostasis	IGI	Interproscan
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048479	style development	IGI	Interproscan
BP	GO:0048480	stigma development	IGI	Interproscan
BP	GO:0048519	negative regulation of biological process	RCA	Interproscan
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0009061	anaerobic respiration	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0009823	cytokinin catabolic process	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010197	polar nucleus fusion	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042447	hormone catabolic process	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT4G36260 (SRS2, STY2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation