Description : Nucleic acid-binding, OB-fold-like protein
Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT4G30800 | |
Cluster | HCCA: Cluster_121 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00033p00158320 | EMB1080,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
AMTR_s00046p00028310 | EMB1080,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
Adi_g014139 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Adi_g021180 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g021181 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g127076 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g17880 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g34347 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Als_g57630 | RPS11-BETA | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g06312 | EMB1080 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g00917 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g40420 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Aspi01Gene71269.t1 | RPS11-BETA,... | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0268.g061080 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
Cba_g28522 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.02G042300.1 | Ceric.02G042300 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.06G039400.1 | Ceric.06G039400 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.27G062600.1 | Ceric.27G062600 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000551.22 | EMB1080 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.09 | OrthoFinder output from all 47 species | |
Cre12.g514500 | EMB1080 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.14 | OrthoFinder output from all 47 species | |
Dac_g01215 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Dac_g01981 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Dac_g26585 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g05219 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Dcu_g09040 | EMB1080 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g21739 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01012877001 | EMB1080 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.09 | OrthoFinder output from all 47 species | |
GSVIVT01035927001 | EMB1080 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
Gb_14912 | EMB1080 | component RPS11 of SSU proteome | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os04g42380.1 | EMB1080, LOC_Os04g42380 | component RPS11 of SSU proteome | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os04g52361.1 | EMB1080, LOC_Os04g52361 | component RPS11 of SSU proteome | 0.12 | OrthoFinder output from all 47 species | |
LOC_Os08g10608.1 | RPS11-BETA,... | component RPS11 of SSU proteome | 0.09 | OrthoFinder output from all 47 species | |
Len_g03065 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Len_g04081 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Len_g54645 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g31892 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
MA_19350g0010 | EMB1080 | component RPS11 of SSU proteome | 0.12 | OrthoFinder output from all 47 species | |
Mp4g23360.1 | EMB1080 | component RPS11 of SSU proteome | 0.07 | OrthoFinder output from all 47 species | |
Mp6g10500.1 | EMB1080 | component RPS11 of SSU proteome | 0.14 | OrthoFinder output from all 47 species | |
Msp_g22593 | RPS11-BETA | component *(uS17) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Nbi_g01705 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
Nbi_g01738 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g11217 | EMB1080 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g11218 | EMB1080 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Pp3c1_27980V3.1 | EMB1080, Pp3c1_27980 | Nucleic acid-binding, OB-fold-like protein | 0.09 | OrthoFinder output from all 47 species | |
Pp3c2_13690V3.1 | EMB1080, Pp3c2_13690 | Nucleic acid-binding, OB-fold-like protein | 0.06 | OrthoFinder output from all 47 species | |
Pp3s116_30V3.1 | EMB1080, Pp3s116_30 | Nucleic acid-binding, OB-fold-like protein | 0.08 | OrthoFinder output from all 47 species | |
Ppi_g27551 | RPS11-BETA | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g53479 | EMB1080 | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0073.g017004 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g04222 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Sam_g12786 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g12787 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Smo268639 | EMB1080 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
Solyc06g073790.3.1 | Solyc06g073790 | component RPS11 of SSU proteome | 0.13 | OrthoFinder output from all 47 species | |
Solyc06g073800.3.1 | Solyc06g073800 | component RPS11 of SSU proteome | 0.06 | OrthoFinder output from all 47 species | |
Solyc12g042080.2.1 | Solyc12g042080 | component RPS11 of SSU proteome | 0.08 | OrthoFinder output from all 47 species | |
Spa_g08091 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Spa_g22575 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g31268 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Tin_g44672 | No alias | component *(uS17) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e006955_P001 | RPS11-BETA,... | component RPS11 of SSU proteome | 0.1 | OrthoFinder output from all 47 species | |
Zm00001e041635_P001 | RPS11-BETA,... | component RPS11 of SSU proteome | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | RCA | Interproscan |
MF | GO:0003735 | structural constituent of ribosome | ISS | Interproscan |
CC | GO:0005737 | cytoplasm | ISM | Interproscan |
BP | GO:0006412 | translation | ISS | Interproscan |
BP | GO:0009909 | regulation of flower development | RCA | Interproscan |
CC | GO:0022627 | cytosolic small ribosomal subunit | IDA | Interproscan |
CC | GO:0022627 | cytosolic small ribosomal subunit | ISS | Interproscan |
BP | GO:0034968 | histone lysine methylation | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000028 | ribosomal small subunit assembly | IEP | HCCA |
BP | GO:0000447 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0000461 | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0000469 | cleavage involved in rRNA processing | IEP | HCCA |
BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | HCCA |
BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
MF | GO:0000976 | transcription cis-regulatory region binding | IEP | HCCA |
MF | GO:0000987 | cis-regulatory region sequence-specific DNA binding | IEP | HCCA |
MF | GO:0001067 | transcription regulatory region nucleic acid binding | IEP | HCCA |
MF | GO:0003860 | 3-hydroxyisobutyryl-CoA hydrolase activity | IEP | HCCA |
MF | GO:0004774 | succinate-CoA ligase activity | IEP | HCCA |
MF | GO:0004776 | succinate-CoA ligase (GDP-forming) activity | IEP | HCCA |
MF | GO:0005244 | voltage-gated monoatomic ion channel activity | IEP | HCCA |
MF | GO:0005253 | monoatomic anion channel activity | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
CC | GO:0005739 | mitochondrion | IEP | HCCA |
CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
CC | GO:0005742 | mitochondrial outer membrane translocase complex | IEP | HCCA |
CC | GO:0005743 | mitochondrial inner membrane | IEP | HCCA |
CC | GO:0005744 | TIM23 mitochondrial import inner membrane translocase complex | IEP | HCCA |
CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
CC | GO:0005829 | cytosol | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006407 | rRNA export from nucleus | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006457 | protein folding | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
BP | GO:0006626 | protein targeting to mitochondrion | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006820 | monoatomic anion transport | IEP | HCCA |
BP | GO:0006839 | mitochondrial transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008308 | voltage-gated monoatomic anion channel activity | IEP | HCCA |
MF | GO:0008320 | protein transmembrane transporter activity | IEP | HCCA |
MF | GO:0008509 | monoatomic anion transmembrane transporter activity | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009218 | pyrimidine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009639 | response to red or far red light | IEP | HCCA |
BP | GO:0009640 | photomorphogenesis | IEP | HCCA |
BP | GO:0009791 | post-embryonic development | IEP | HCCA |
BP | GO:0010030 | positive regulation of seed germination | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0015450 | protein-transporting ATPase activity | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
MF | GO:0016018 | cyclosporin A binding | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016289 | CoA hydrolase activity | IEP | HCCA |
MF | GO:0016790 | thiolester hydrolase activity | IEP | HCCA |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | HCCA |
MF | GO:0016878 | acid-thiol ligase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0018195 | peptidyl-arginine modification | IEP | HCCA |
BP | GO:0018216 | peptidyl-arginine methylation | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
CC | GO:0019866 | organelle inner membrane | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
CC | GO:0022625 | cytosolic large ribosomal subunit | IEP | HCCA |
CC | GO:0022626 | cytosolic ribosome | IEP | HCCA |
MF | GO:0022832 | voltage-gated channel activity | IEP | HCCA |
MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0030686 | 90S preribosome | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031125 | rRNA 3'-end processing | IEP | HCCA |
CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0034969 | histone arginine methylation | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
MF | GO:0042277 | peptide binding | IEP | HCCA |
MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043628 | regulatory ncRNA 3'-end processing | IEP | HCCA |
BP | GO:0043985 | histone H4-R3 methylation | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0051029 | rRNA transport | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051170 | import into nucleus | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0070585 | protein localization to mitochondrion | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071215 | cellular response to abscisic acid stimulus | IEP | HCCA |
BP | GO:0071396 | cellular response to lipid | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | HCCA |
BP | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | IEP | HCCA |
BP | GO:0097064 | ncRNA export from nucleus | IEP | HCCA |
BP | GO:0097306 | cellular response to alcohol | IEP | HCCA |
CC | GO:0098798 | mitochondrial protein-containing complex | IEP | HCCA |
CC | GO:0098799 | outer mitochondrial membrane protein complex | IEP | HCCA |
MF | GO:0140318 | protein transporter activity | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | HCCA |
No external refs found! |