AT4G30800


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G30800
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
AMTR_s00046p00028310 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Adi_g014139 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Adi_g021180 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g021181 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g127076 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g17880 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g34347 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g57630 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aob_g06312 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00917 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g40420 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aspi01Gene71269.t1 RPS11-BETA,... component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0268.g061080 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Cba_g28522 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.02G042300.1 Ceric.02G042300 component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.06G039400.1 Ceric.06G039400 component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.27G062600.1 Ceric.27G062600 component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000551.22 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Cre12.g514500 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Dac_g01215 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dac_g01981 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dac_g26585 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g05219 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g09040 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g21739 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01012877001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
GSVIVT01035927001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Gb_14912 EMB1080 component RPS11 of SSU proteome 0.06 OrthoFinder output from all 47 species
LOC_Os04g42380.1 EMB1080, LOC_Os04g42380 component RPS11 of SSU proteome 0.07 OrthoFinder output from all 47 species
LOC_Os04g52361.1 EMB1080, LOC_Os04g52361 component RPS11 of SSU proteome 0.12 OrthoFinder output from all 47 species
LOC_Os08g10608.1 RPS11-BETA,... component RPS11 of SSU proteome 0.09 OrthoFinder output from all 47 species
Len_g03065 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g04081 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Len_g54645 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g31892 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_19350g0010 EMB1080 component RPS11 of SSU proteome 0.12 OrthoFinder output from all 47 species
Mp4g23360.1 EMB1080 component RPS11 of SSU proteome 0.07 OrthoFinder output from all 47 species
Mp6g10500.1 EMB1080 component RPS11 of SSU proteome 0.14 OrthoFinder output from all 47 species
Msp_g22593 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Nbi_g01705 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g01738 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ore_g11217 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ore_g11218 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c1_27980V3.1 EMB1080, Pp3c1_27980 Nucleic acid-binding, OB-fold-like protein 0.09 OrthoFinder output from all 47 species
Pp3c2_13690V3.1 EMB1080, Pp3c2_13690 Nucleic acid-binding, OB-fold-like protein 0.06 OrthoFinder output from all 47 species
Pp3s116_30V3.1 EMB1080, Pp3s116_30 Nucleic acid-binding, OB-fold-like protein 0.08 OrthoFinder output from all 47 species
Ppi_g27551 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g53479 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017004 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g04222 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g12786 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g12787 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo268639 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Solyc06g073790.3.1 Solyc06g073790 component RPS11 of SSU proteome 0.13 OrthoFinder output from all 47 species
Solyc06g073800.3.1 Solyc06g073800 component RPS11 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc12g042080.2.1 Solyc12g042080 component RPS11 of SSU proteome 0.08 OrthoFinder output from all 47 species
Spa_g08091 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Spa_g22575 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g31268 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Tin_g44672 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e006955_P001 RPS11-BETA,... component RPS11 of SSU proteome 0.1 OrthoFinder output from all 47 species
Zm00001e041635_P001 RPS11-BETA,... component RPS11 of SSU proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit ISS Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004774 succinate-CoA ligase activity IEP HCCA
MF GO:0004776 succinate-CoA ligase (GDP-forming) activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016018 cyclosporin A binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016878 acid-thiol ligase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018195 peptidyl-arginine modification IEP HCCA
BP GO:0018216 peptidyl-arginine methylation IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034969 histone arginine methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0043985 histone H4-R3 methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
IPR032440 Ribosomal_S11_N 4 72
No external refs found!