AT4G30200 (VEL1, VIL2)

Aliases : VEL1, VIL2

Description : vernalization5/VIN3-like

Gene families : OG0001143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001143_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G30200
Cluster	HCCA: Cluster_152

Target	Alias	Description	ECC score	Gene Family Method
Adi_g109508	VEL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g29177	VEL1, VIL2	PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone...	0.02	OrthoFinder output from all 47 species
Aob_g26103	VIL1, VRN5	PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone...	0.02	OrthoFinder output from all 47 species
Aop_g68913	VEL1, VIL2	PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone...	0.02	OrthoFinder output from all 47 species
Cba_g20507	VIN3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g05840.1	VEL1, VIL2,...	PRC2-VRN-interacting PHD protein (VIN3\|VRN5)	0.02	OrthoFinder output from all 47 species
LOC_Os05g05310.2	VIL1, VRN5,...	PRC2-VRN-interacting PHD protein (VIN3\|VRN5)	0.04	OrthoFinder output from all 47 species
Lfl_g09244	VIL1, VRN5	PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone...	0.02	OrthoFinder output from all 47 species
Ore_g13965	VEL1, VIL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g43802	VIL1, VRN5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009640	VIL1, VRN5	PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone...	0.03	OrthoFinder output from all 47 species
Zm00001e018303_P001	VIL1, VRN5,...	PRC2-VRN-interacting PHD protein (VIN3\|VRN5)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005677	chromatin silencing complex	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007623	circadian rhythm	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IPI	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016926	protein desumoylation	RCA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031519	PcG protein complex	IDA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032922	circadian regulation of gene expression	IEP	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0035064	methylated histone binding	IDA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042393	histone binding	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
MF	GO:0042802	identical protein binding	IDA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IMP	Interproscan
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050665	hydrogen peroxide biosynthetic process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140034	methylation-dependent protein binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1900109	regulation of histone H3-K9 dimethylation	None	Extended
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IDA	Interproscan
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	None	Extended
BP	GO:2000028	regulation of photoperiodism, flowering	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
CC	GO:0000815	ESCRT III complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004707	MAP kinase activity	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006482	protein demethylation	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006986	response to unfolded protein	IEP	HCCA
BP	GO:0006990	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	IEP	HCCA
BP	GO:0008214	protein dealkylation	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009720	detection of hormone stimulus	IEP	HCCA
BP	GO:0009726	detection of endogenous stimulus	IEP	HCCA
BP	GO:0009729	detection of brassinosteroid stimulus	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009900	dehiscence	IEP	HCCA
BP	GO:0009901	anther dehiscence	IEP	HCCA
BP	GO:0010020	chloroplast fission	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0016577	histone demethylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
BP	GO:0032386	regulation of intracellular transport	IEP	HCCA
BP	GO:0032388	positive regulation of intracellular transport	IEP	HCCA
MF	GO:0032451	demethylase activity	IEP	HCCA
MF	GO:0032452	histone demethylase activity	IEP	HCCA
MF	GO:0032454	histone H3K9 demethylase activity	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0033157	regulation of intracellular protein transport	IEP	HCCA
BP	GO:0033169	histone H3-K9 demethylation	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
CC	GO:0036452	ESCRT complex	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043572	plastid fission	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	HCCA
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	HCCA
BP	GO:0046825	regulation of protein export from nucleus	IEP	HCCA
BP	GO:0046827	positive regulation of protein export from nucleus	IEP	HCCA
CC	GO:0048471	perinuclear region of cytoplasm	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0051050	positive regulation of transport	IEP	HCCA
BP	GO:0051222	positive regulation of protein transport	IEP	HCCA
BP	GO:0051223	regulation of protein transport	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0070076	histone lysine demethylation	IEP	HCCA
BP	GO:0070201	regulation of establishment of protein localization	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0070988	demethylation	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140457	protein demethylase activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901522	positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1903829	positive regulation of protein localization	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032881	Oberon_PHD	129	247

External Links

No external refs found!

AT4G30200 (VEL1, VIL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation