AT4G29930

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29930

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020954	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10673	SCRM2, ICE2	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g13552	ATBHLH029,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g27756	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01029311001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
Gb_15579	SCRM2, ICE2	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Gb_36380	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os04g23550.1	LOC_Os04g23550	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
LOC_Os04g31290.1	ATBHLH029,...	transcription factor (bHLH). iron uptake transcription factor FIT	0.04	OrthoFinder output from all 47 species
MA_126263g0010	AMS	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
MA_16489g0010	No alias	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
MA_196213g0010	SCRM2, ICE2	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
MA_44439g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_86748g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc02g079810.3.1	DYT1, Solyc02g079810	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc05g014590.3.1	Solyc05g014590	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc06g051550.4.1	ATBHLH029,...	transcription factor (bHLH). iron uptake transcription factor FIT	0.02	OrthoFinder output from all 47 species
Zm00001e008393_P001	ATBHLH029,...	transcription factor (bHLH). iron uptake transcription factor FIT	0.03	OrthoFinder output from all 47 species
Zm00001e008463_P008	Zm00001e008463	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e040186_P002	Zm00001e040186	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e040675_P003	Zm00001e040675	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	57	99

External Links

No external refs found!

AT4G29930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation