AT4G29410

Description : Ribosomal L28e protein family

Gene families : OG0000910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29410

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00210210	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Adi_g025176	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g025177	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g029567	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g073738	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Adi_g126203	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aev_g03520	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g00426	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Als_g19634	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g23593	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Als_g30166	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aob_g04591	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g35789	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g00977	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.3	OrthoFinder output from all 47 species
Aop_g47530	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g66247	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0191.g057028	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cba_g28589	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g29799	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.25G035500.1	Ceric.25G035500	component *(eL28) of large ribosomal-subunit (LSU)...	0.31	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020710.93	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.28	OrthoFinder output from all 47 species
Cre11.g467578	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.4	OrthoFinder output from all 47 species
Dac_g03084	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g26158	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Dcu_g14613	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Dcu_g27550	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dde_g08723	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g03161	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01016895001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.42	OrthoFinder output from all 47 species
GSVIVT01035350001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Gb_38783	No alias	component RPL28 of LSU proteome component	0.24	OrthoFinder output from all 47 species
LOC_Os01g51020.1	LOC_Os01g51020	component RPL28 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os02g57540.1	LOC_Os02g57540	component RPL28 of LSU proteome component	0.47	OrthoFinder output from all 47 species
LOC_Os05g46430.1	LOC_Os05g46430	component RPL28 of LSU proteome component	0.4	OrthoFinder output from all 47 species
Len_g16638	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g00141	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g24992	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
MA_10428490g0010	No alias	component RPL28 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Mp1g26940.1	No alias	component RPL28 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Msp_g10686	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Msp_g36633	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Msp_g38772	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g38943	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g01990	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ore_g05983	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g03637	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Pir_g60467	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Pir_g62486	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pnu_g11024	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c14_10480V3.1	Pp3c14_10480	Ribosomal L28e protein family	0.23	OrthoFinder output from all 47 species
Pp3c17_14060V3.1	Pp3c17_14060	Ribosomal L28e protein family	0.28	OrthoFinder output from all 47 species
Pp3c2_6100V3.1	Pp3c2_6100	Ribosomal L28e protein family	0.15	OrthoFinder output from all 47 species
Ppi_g19107	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g19271	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g25867	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0275.g027057	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Sam_g05292	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g05465	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g05602	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g06118	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g06119	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g14505	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g18296	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g31428	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Sam_g31492	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g37199	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g43777	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g46661	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g48404	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo164298	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Solyc03g121330.3.1	Solyc03g121330	component RPL28 of LSU proteome component	0.46	OrthoFinder output from all 47 species
Solyc06g062500.4.1	Solyc06g062500	component RPL28 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Solyc12g044720.2.1	Solyc12g044720	component RPL28 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Spa_g19251	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Spa_g21825	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.28	OrthoFinder output from all 47 species
Spa_g36712	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g35509	No alias	component *(eL28) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Zm00001e026410_P001	Zm00001e026410	component RPL28 of LSU proteome component	0.41	OrthoFinder output from all 47 species
Zm00001e032283_P002	Zm00001e032283	component RPL28 of LSU proteome component	0.55	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029004	L28e/Mak16	8	126

External Links

No external refs found!

AT4G29410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation