AT4G24580 (REN1)

Aliases : REN1

Description : Rho GTPase activation protein (RhoGAP) with PH domain

Gene families : OG0001811 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001811_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24580

Target	Alias	Description	ECC score	Gene Family Method
Ala_g10132	No alias	ROP-activating protein *(RenGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g11821	No alias	ROP-activating protein *(RenGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g36703	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene72859.t1	Aspi01Gene72859	ROP-activating protein *(RenGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g09456	No alias	ROP-activating protein *(RenGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01978	No alias	ROP-activating protein *(RenGAP) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009150001	No alias	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
GSVIVT01009151001	REN1	Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
LOC_Os03g11140.1	REN1, LOC_Os03g11140	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species
LOC_Os03g24180.1	LOC_Os03g24180	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Lfl_g39495	No alias	ROP-activating protein *(RenGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g12960	No alias	ROP-activating protein *(RenGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008570	No alias	ROP-activating protein *(RenGAP) & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g39070	No alias	ROP-activating protein *(RenGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001096_P001	REN1, Zm00001e001096	Rho GTPase-activating protein REN1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e036715_P004	REN1, Zm00001e036715	Rho GTPase-activating protein REN1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Zm00001e038550_P002	REN1, Zm00001e038550	Rho GTPase-activating protein REN1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005938	cell cortex	IDA	Interproscan
BP	GO:0007155	cell adhesion	None	Extended
BP	GO:0007165	signal transduction	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009846	pollen germination	IMP	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009865	pollen tube adhesion	IMP	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
CC	GO:0030133	transport vesicle	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0035023	regulation of Rho protein signal transduction	None	Extended
BP	GO:0035024	negative regulation of Rho protein signal transduction	IMP	Interproscan
MF	GO:0035091	phosphatidylinositol binding	ISS	Interproscan
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0042995	cell projection	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0045177	apical part of cell	IDA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046578	regulation of Ras protein signal transduction	None	Extended
BP	GO:0046580	negative regulation of Ras protein signal transduction	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048868	pollen tube development	IMP	Interproscan
BP	GO:0048868	pollen tube development	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051056	regulation of small GTPase mediated signal transduction	None	Extended
BP	GO:0051058	negative regulation of small GTPase mediated signal transduction	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070382	exocytic vesicle	IDA	Interproscan
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0090406	pollen tube	IDA	Interproscan
CC	GO:0097708	intracellular vesicle	None	Extended
BP	GO:0098609	cell-cell adhesion	None	Extended
CC	GO:0099503	secretory vesicle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
BP	GO:1902532	negative regulation of intracellular signal transduction	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0010191	mucilage metabolic process	IEP	HCCA
BP	GO:0010192	mucilage biosynthetic process	IEP	HCCA
BP	GO:0010214	seed coat development	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	HCCA
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000198	RhoGAP_dom	222	365
IPR025757	MIP1_Leuzipper	659	733
IPR001849	PH_domain	62	166

External Links

No external refs found!

AT4G24580 (REN1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation