AT4G23750 (TMO3, CRF2)

Aliases : TMO3, CRF2

Description : cytokinin response factor 2

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G23750

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00095120	ERF110,...	Ethylene-responsive transcription factor ERF110...	0.01	OrthoFinder output from all 47 species
AMTR_s00021p00223240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.01	OrthoFinder output from all 47 species
AMTR_s00058p00066390	RAP2.11,...	External stimuli response.biotic...	0.01	OrthoFinder output from all 47 species
AMTR_s00095p00096190	CBF4, DREB1D,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.01	OrthoFinder output from all 47 species
AT1G12890	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT1G22810	No alias	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
AT1G24590	DRN-LIKE, ESR2,...	DORNROSCHEN-like	0.04	OrthoFinder output from all 47 species
AT1G33760	No alias	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
AT1G77200	No alias	Integrase-type DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G77640	No alias	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
AT2G36450	HRD	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
AT3G14230	RAP2.2	related to AP2 2	0.03	OrthoFinder output from all 47 species
AT3G23220	No alias	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
AT4G11140	CRF1	cytokinin response factor 1	0.04	OrthoFinder output from all 47 species
AT5G51190	No alias	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
Aev_g07933	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Aev_g17825	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g21334	tny	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g09848	No alias	subgroup ERF-III transcription factor & original...	0.01	OrthoFinder output from all 47 species
Als_g06158	No alias	subgroup ERF-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08964	No alias	subgroup ERF-V transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Als_g13220	CRF3	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g38639	No alias	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g46307	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.01	OrthoFinder output from all 47 species
Aop_g00507	WIN1, SHN1	subgroup ERF-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene37405.t1	Aspi01Gene37405	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene51269.t1	TINY2, Aspi01Gene51269	subgroup ERF-III transcription factor & original...	0.01	OrthoFinder output from all 47 species
Aspi01Gene63655.t1	HRE2, Aspi01Gene63655	transcription factor component *(HRE/RAP2.12) of...	0.01	OrthoFinder output from all 47 species
Azfi_s0119.g046680	No alias	subgroup ERF-IX transcription factor & original...	0.05	OrthoFinder output from all 47 species
Cba_g13066	No alias	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G024500.1	tny, Ceric.03G024500	subgroup ERF-III transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ceric.11G046500.1	Ceric.11G046500	subgroup ERF-V transcription factor & original...	0.01	OrthoFinder output from all 47 species
Ehy_g26298	ATERF3, ERF3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010629001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01021060001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01022076001	DEAR3	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01035911001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.01	OrthoFinder output from all 47 species
Gb_03645	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.01	OrthoFinder output from all 47 species
Gb_11794	No alias	transcription factor (DREB)	0.14	OrthoFinder output from all 47 species
Gb_29220	ERF-1, ATERF-1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Gb_29359	RAP2.11	transcription factor (ERF). transcription factor (ERN1)	0.02	OrthoFinder output from all 47 species
LOC_Os03g15660.1	DREB26, LOC_Os03g15660	Ethylene-responsive transcription factor ERF012...	0.02	OrthoFinder output from all 47 species
Lfl_g16995	No alias	cutin and suberin biosynthesis transcription factor...	0.02	OrthoFinder output from all 47 species
Lfl_g23265	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_132427g0010	No alias	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Mp6g08690.1	TINY2	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Ore_g13186	ERF72, EBP, ATEBP, RAP2.3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g26705	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g33731	RAP2.11	transcription factor *(ERN1) & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g33732	RAP2.11	transcription factor *(ERN1) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g05242	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g06726	No alias	subgroup ERF-I transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g33759	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.01	OrthoFinder output from all 47 species
Ppi_g11128	HRE2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g32062	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002282	No alias	subgroup ERF-VI transcription factor & original...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398	DEAR1, CEJ1, ATERF#011	not classified & original description: CDS=1-1134	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013375	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013429	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021258	CRF5	subgroup ERF-VI transcription factor & original...	0.01	OrthoFinder output from all 47 species
Solyc01g090340.3.1	ATERF13, ERF13,...	Ethylene-responsive transcription factor 13...	0.05	OrthoFinder output from all 47 species
Solyc03g117230.1.1	Solyc03g117230	Ethylene-responsive transcription factor ERF084...	0.02	OrthoFinder output from all 47 species
Solyc05g050830.3.1	Solyc05g050830	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc11g042580.1.1	Solyc11g042580	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Spa_g39600	RAP2.11	transcription factor *(ERN1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g52130	No alias	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Tin_g00486	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e019026_P001	CRF3, Zm00001e019026	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Zm00001e027350_P001	ATERF12, ERF12,...	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Zm00001e035811_P001	PUCHI, Zm00001e035811	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
MF	GO:0042802	identical protein binding	IPI	Interproscan
BP	GO:0042991	obsolete transcription factor import into nucleus	IDA	Interproscan
BP	GO:0042991	obsolete transcription factor import into nucleus	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048364	root development	IEP	Interproscan
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048825	cotyledon development	IMP	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	121	170

External Links

No external refs found!

AT4G23750 (TMO3, CRF2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation