AT4G21330 (DYT1)

Aliases : DYT1

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G21330
Cluster	HCCA: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
Aev_g17977	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11432	ATBHLH029,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11860	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g19713	ATBHLH029,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene35383.t1	AMS, Aspi01Gene35383	bHLH-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Azfi_s0005.g009209	ATBHLH029,...	bHLH-type transcription factor & original description: CDS=1-1536	0.03	OrthoFinder output from all 47 species
Ceric.20G044000.1	Ceric.20G044000	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.20G045100.1	Ceric.20G045100	bHLH-type transcription factor & original description:...	0.07	OrthoFinder output from all 47 species
Dac_g21599	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g38747	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g27756	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18600	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_15579	SCRM2, ICE2	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Gb_26391	ATBHLH029,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Lfl_g24609	ATBHLH029,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_126263g0010	AMS	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MA_16489g0010	No alias	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g30612	ATBHLH029,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g02789	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g29473	ATBHLH029,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g20435	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015480	No alias	bHLH-type transcription factor & original description: CDS=1-1986	0.03	OrthoFinder output from all 47 species
Sam_g06042	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo431375	No alias	No description available	0.03	OrthoFinder output from all 47 species
Solyc02g079810.3.1	DYT1, Solyc02g079810	transcription factor (bHLH)	0.08	OrthoFinder output from all 47 species
Solyc06g051550.4.1	ATBHLH029,...	transcription factor (bHLH). iron uptake transcription factor FIT	0.03	OrthoFinder output from all 47 species
Spa_g02622	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g32940	AMS	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g43403	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e008463_P008	Zm00001e008463	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e025243_P003	AMS, Zm00001e025243	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e040186_P002	Zm00001e040186	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e040732_P001	ATBHLH029,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IMP	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048658	anther wall tapetum development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006825	copper ion transport	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048654	anther morphogenesis	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055046	microgametogenesis	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	35	78

External Links

No external refs found!

AT4G21330 (DYT1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation