AT4G17810

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17810

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00186840	GIS,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
Aev_g16389	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g18616	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene60683.t1	Aspi01Gene60683	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene60689.t1	Aspi01Gene60689	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g08072	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g13421	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01013168001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	OrthoFinder output from all 47 species
LOC_Os02g53530.1	ZFP8, LOC_Os02g53530	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os04g36650.1	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_10430024g0010	No alias	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Ppi_g12483	JGL, NUB	transcriptional regulator *(JAG/NUB) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002709	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Solyc01g107430.2.1	ZFP7, Solyc01g107430	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc09g061870.3.1	Solyc09g061870	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e003962_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e030783_P001	ZFP8, Zm00001e030783	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e034092_P001	ZFP10, ATZFP10,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e036220_P001	ZFP8, Zm00001e036220	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006417	regulation of translation	RCA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009657	plastid organization	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034248	regulation of amide metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009686	gibberellin biosynthetic process	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009959	negative gravitropism	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010161	red light signaling pathway	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
MF	GO:0010313	phytochrome binding	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0016101	diterpenoid metabolic process	IEP	HCCA
BP	GO:0016102	diterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0045962	positive regulation of development, heterochronic	IEP	HCCA
MF	GO:0047627	adenylylsulfatase activity	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
BP	GO:0071491	cellular response to red light	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT4G17810

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation