AT4G16310 (LDL3)


Aliases : LDL3

Description : LSD1-like 3


Gene families : OG0003426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003426_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G16310

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00016710 LDL3,... Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
Adi_g011994 LDL3 histone demethylase *(KDM1d) & original description: none 0.14 OrthoFinder output from all 47 species
Aev_g06185 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g05833 LDL3 histone demethylase *(KDM1d) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g11027 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22303 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g13453 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g27045 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46596.t1 LDL3, Aspi01Gene46596 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66928.t1 LDL3, Aspi01Gene66928 histone demethylase *(KDM1d) & original description: none 0.1 OrthoFinder output from all 47 species
Azfi_s0054.g033788 LDL3 histone demethylase *(KDM1d) & original description: CDS=1-6162 0.06 OrthoFinder output from all 47 species
Cba_g14216 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G013700.1 LDL3, Ceric.04G013700 histone demethylase *(KDM1d) & original description:... 0.17 OrthoFinder output from all 47 species
Ceric.12G094400.1 LDL3, Ceric.12G094400 histone demethylase *(KDM1d) & original description:... 0.08 OrthoFinder output from all 47 species
Dac_g07791 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10965 LDL3 histone demethylase *(KDM1d) & original description: none 0.19 OrthoFinder output from all 47 species
Dcu_g10966 LDL3 histone demethylase *(KDM1d) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g01702 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009833001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.1 OrthoFinder output from all 47 species
GSVIVT01009834001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.22 OrthoFinder output from all 47 species
Gb_40614 LDL3 lysine-specific demethylase (LDL3) 0.18 OrthoFinder output from all 47 species
LOC_Os10g38850.1 LDL3, LOC_Os10g38850 lysine-specific demethylase (LDL3) 0.05 OrthoFinder output from all 47 species
Len_g18074 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04294 LDL3 histone demethylase *(KDM1d) & original description: none 0.1 OrthoFinder output from all 47 species
MA_120420g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_120420g0020 LDL3 lysine-specific demethylase (LDL3) 0.2 OrthoFinder output from all 47 species
MA_7050228g0010 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.03 OrthoFinder output from all 47 species
Msp_g14381 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g38960 LDL3 histone demethylase *(KDM1d) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g08319 LDL3 histone demethylase *(KDM1d) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g40775 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g28867 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g11421 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c1_1170V3.1 LDL3, Pp3c1_1170 LSD1-like 3 0.02 OrthoFinder output from all 47 species
Pp3c1_6380V3.1 LDL3, Pp3c1_6380 LSD1-like 3 0.01 OrthoFinder output from all 47 species
Ppi_g02424 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14951 LDL3 histone demethylase *(KDM1d) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g36106 No alias histone demethylase *(KDM1d) & original description: none 0.11 OrthoFinder output from all 47 species
Smo405878 LDL3 Chromatin organisation.histone modifications.histone... 0.12 OrthoFinder output from all 47 species
Solyc04g081100.3.1 LDL3, Solyc04g081100 lysine-specific demethylase (LDL3) 0.12 OrthoFinder output from all 47 species
Spa_g10310 LDL3 histone demethylase *(KDM1d) & original description: none 0.13 OrthoFinder output from all 47 species
Spa_g26760 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e002184_P001 LDL3, Zm00001e002184 lysine-specific demethylase (LDL3) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
MF GO:0008131 primary amine oxidase activity ISS Interproscan
BP GO:0009851 auxin biosynthetic process RCA Interproscan
BP GO:0010229 inflorescence development RCA Interproscan
BP GO:0048825 cotyledon development RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010213 non-photoreactive DNA repair IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048441 petal development IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048859 formation of anatomical boundary IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0050994 regulation of lipid catabolic process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090213 regulation of radial pattern formation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0090691 formation of plant organ boundary IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 388 468
IPR002937 Amino_oxidase 628 1102
No external refs found!