AT4G02820

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G02820

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00019470	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g80270,...	0.03	OrthoFinder output from all 47 species
AMTR_s00095p00027730	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g80270,...	0.05	OrthoFinder output from all 47 species
AMTR_s00135p00094680	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g27460...	0.01	OrthoFinder output from all 47 species
Adi_g057168	No alias	RNA editing factor *(POCO) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04726	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g30824	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02151	No alias	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.31G052700.1	Ceric.31G052700	RNA editing factor *(POCO) & original description:...	0.02	OrthoFinder output from all 47 species
Dcu_g01745	PPR596	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03895	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01002065001	No alias	Pentatricopeptide repeat-containing protein At4g21705,...	0.06	OrthoFinder output from all 47 species
GSVIVT01020533001	No alias	Pentatricopeptide repeat-containing protein At2g20710,...	0.05	OrthoFinder output from all 47 species
GSVIVT01028139001	No alias	Pentatricopeptide repeat-containing protein At1g02370,...	0.03	OrthoFinder output from all 47 species
GSVIVT01031246001	No alias	Pentatricopeptide repeat-containing protein At4g01990,...	0.07	OrthoFinder output from all 47 species
GSVIVT01033642001	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.06	OrthoFinder output from all 47 species
Gb_03507	No alias	Pentatricopeptide repeat-containing protein At4g02820,...	0.02	OrthoFinder output from all 47 species
Gb_03508	No alias	Pentatricopeptide repeat-containing protein At4g02820,...	0.03	OrthoFinder output from all 47 species
Gb_09452	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.05	OrthoFinder output from all 47 species
Gb_14576	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.03	OrthoFinder output from all 47 species
Gb_20238	No alias	RNA editing factor (POCO)	0.06	OrthoFinder output from all 47 species
Gb_27873	No alias	RNA editing factor (POCO)	0.05	OrthoFinder output from all 47 species
Gb_38114	No alias	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
LOC_Os01g17320.1	PPR596, LOC_Os01g17320	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
LOC_Os01g19490.1	LOC_Os01g19490	Pentatricopeptide repeat-containing protein At4g01990,...	0.05	OrthoFinder output from all 47 species
LOC_Os02g55310.1	LOC_Os02g55310	Pentatricopeptide repeat-containing protein At5g27460...	0.01	OrthoFinder output from all 47 species
LOC_Os04g25410.1	LOC_Os04g25410	Pentatricopeptide repeat-containing protein At1g60770...	0.06	OrthoFinder output from all 47 species
LOC_Os07g12140.1	LOC_Os07g12140	RNA editing factor (POCO)	0.06	OrthoFinder output from all 47 species
LOC_Os07g40750.1	LOC_Os07g40750	Pentatricopeptide repeat-containing protein At4g21705,...	0.06	OrthoFinder output from all 47 species
LOC_Os10g35750.1	LOC_Os10g35750	Pentatricopeptide repeat-containing protein At2g20710,...	0.04	OrthoFinder output from all 47 species
LOC_Os12g07260.1	PPR596, LOC_Os12g07260	RNA editing factor (POCO)	0.1	OrthoFinder output from all 47 species
LOC_Os12g34340.1	LOC_Os12g34340	Pentatricopeptide repeat-containing protein At4g02820,...	0.05	OrthoFinder output from all 47 species
MA_100637g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.05	OrthoFinder output from all 47 species
MA_10431989g0010	No alias	RNA editing factor (POCO)	0.03	OrthoFinder output from all 47 species
MA_10435629g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.03	OrthoFinder output from all 47 species
MA_128872g0020	No alias	Pentatricopeptide repeat-containing protein At1g02150...	0.02	OrthoFinder output from all 47 species
MA_29806g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.04	OrthoFinder output from all 47 species
MA_492314g0010	No alias	RNA editing factor (POCO)	0.08	OrthoFinder output from all 47 species
MA_7558g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.07	OrthoFinder output from all 47 species
MA_77400g0010	No alias	Pentatricopeptide repeat-containing protein At1g15480,...	0.03	OrthoFinder output from all 47 species
MA_94340g0010	No alias	Pentatricopeptide repeat-containing protein At1g60770...	0.03	OrthoFinder output from all 47 species
Msp_g25474	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Smo420704	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.03	OrthoFinder output from all 47 species
Solyc01g079320.4.1	Solyc01g079320	Pentatricopeptide repeat-containing protein At1g02370,...	0.09	OrthoFinder output from all 47 species
Solyc01g100580.3.1	Solyc01g100580	Pentatricopeptide repeat-containing protein At4g01990,...	0.05	OrthoFinder output from all 47 species
Solyc02g078330.3.1	Solyc02g078330	Pentatricopeptide repeat-containing protein At2g20710,...	0.03	OrthoFinder output from all 47 species
Solyc02g078350.3.1	Solyc02g078350	Pentatricopeptide repeat-containing protein At4g21705,...	0.03	OrthoFinder output from all 47 species
Solyc06g005140.3.1	Solyc06g005140	Pentatricopeptide repeat-containing protein At4g02820,...	0.04	OrthoFinder output from all 47 species
Solyc06g071900.3.1	Solyc06g071900	Pentatricopeptide repeat-containing protein At1g07590,...	0.03	OrthoFinder output from all 47 species
Solyc07g063220.4.1	Solyc07g063220	Pentatricopeptide repeat-containing protein At4g21705,...	0.04	OrthoFinder output from all 47 species
Solyc11g006380.2.1	Solyc11g006380	Pentatricopeptide repeat-containing protein At1g60770...	0.1	OrthoFinder output from all 47 species
Solyc12g020050.2.1	PPR596, Solyc12g020050	RNA editing factor (POCO)	0.08	OrthoFinder output from all 47 species
Tin_g14511	No alias	RNA ediTing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g37476	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e012594_P001	Zm00001e012594	Pentatricopeptide repeat-containing protein At4g21705,...	0.03	OrthoFinder output from all 47 species
Zm00001e017396_P001	PPR596, Zm00001e017396	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
Zm00001e025470_P001	PPR596, Zm00001e025470	RNA editing factor (POCO)	0.04	OrthoFinder output from all 47 species
Zm00001e026211_P002	Zm00001e026211	Pentatricopeptide repeat-containing protein At1g02370,...	0.06	OrthoFinder output from all 47 species
Zm00001e036620_P001	Zm00001e036620	Pentatricopeptide repeat-containing protein At1g60770...	0.11	OrthoFinder output from all 47 species
Zm00001e039746_P002	Zm00001e039746	Pentatricopeptide repeat-containing protein At4g02820,...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005677	chromatin silencing complex	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031058	positive regulation of histone modification	IEP	HCCA
BP	GO:0031060	regulation of histone methylation	IEP	HCCA
BP	GO:0031062	positive regulation of histone methylation	IEP	HCCA
BP	GO:0031401	positive regulation of protein modification process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048572	short-day photoperiodism	IEP	HCCA
BP	GO:0048575	short-day photoperiodism, flowering	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	HCCA
BP	GO:0051571	positive regulation of histone H3-K4 methylation	IEP	HCCA
BP	GO:0061085	regulation of histone H3-K27 methylation	IEP	HCCA
BP	GO:0061087	positive regulation of histone H3-K27 methylation	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	229	277
IPR002885	Pentatricopeptide_repeat	200	224
IPR002885	Pentatricopeptide_repeat	339	363
IPR002885	Pentatricopeptide_repeat	165	193

External Links

No external refs found!

AT4G02820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation