AT4G02195 (ATSYP42, SYP42, ATTLG2B, TLG2B)

Aliases : ATSYP42, SYP42, ATTLG2B, TLG2B

Description : syntaxin of plants 42

Gene families : OG0004092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G02195

Target	Alias	Description	ECC score	Gene Family Method
AT3G05710	SYP43, ATSYP43	syntaxin of plants 43	0.03	OrthoFinder output from all 47 species
Als_g04769	ATSYP41, ATTLG2A, SYP41	Qa-type SYP4-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
GSVIVT01031201001	SYP43, ATSYP43	Vesicle trafficking.SNARE target membrane recognition...	0.04	OrthoFinder output from all 47 species
LOC_Os06g02570.1	SYP43, ATSYP43,...	SYP4-group Qa-type SNARE component	0.03	OrthoFinder output from all 47 species
Zm00001e016500_P001	SYP43, ATSYP43,...	SYP4-group Qa-type SNARE component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005484	SNAP receptor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005798	Golgi-associated vesicle	None	Extended
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
CC	GO:0005802	trans-Golgi network	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	TAS	Interproscan
BP	GO:0006891	intra-Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	IGI	Interproscan
BP	GO:0007034	vacuolar transport	IGI	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009306	protein secretion	IGI	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
CC	GO:0030133	transport vesicle	None	Extended
CC	GO:0030135	coated vesicle	None	Extended
CC	GO:0030136	clathrin-coated vesicle	None	Extended
CC	GO:0030140	trans-Golgi network transport vesicle	TAS	Interproscan
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032940	secretion by cell	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0035592	establishment of protein localization to extracellular region	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046903	secretion	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071692	protein localization to extracellular region	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140352	export from cell	None	Extended
BP	GO:1900150	regulation of defense response to fungus	IGI	Interproscan
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000164	protein phosphatase type 1 complex	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000727	T_SNARE_dom	263	315

External Links

No external refs found!

AT4G02195 (ATSYP42, SYP42, ATTLG2B, TLG2B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation