AT4G00540 (ATMYB3R2, MYB3R-2,...)

Aliases : ATMYB3R2, MYB3R-2, MYB3R2, PC-MYB2

Description : myb domain protein 3r2

Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00540

Target	Alias	Description	ECC score	Gene Family Method
AT1G43330	No alias	Homeodomain-like superfamily protein	0.05	OrthoFinder output from all 47 species
AT2G25230	MYB100, AtMYB100	myb domain protein 100	0.05	OrthoFinder output from all 47 species
AT5G39700	MYB89, AtMYB89	myb domain protein 89	0.03	OrthoFinder output from all 47 species
Adi_g109382	MYB77	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.04	OrthoFinder output from all 47 species
Als_g14702	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g27407	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g12966	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010006001	BW52, ATMYB52, MYB52	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01035663001	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.02	OrthoFinder output from all 47 species
Ppi_g30650	MYB70, AtMYB70	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g112890.1.1	AtMYB98, MYB98,...	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004143	diacylglycerol kinase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	156	198

External Links

No external refs found!

AT4G00540 (ATMYB3R2, MYB3R-2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation