AT3G62870

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG0001502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001502_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G62870

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00218360	evm_27.TU.AmTr_v1...	60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica	0.23	OrthoFinder output from all 47 species
AMTR_s00047p00140090	evm_27.TU.AmTr_v1...	60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica	0.13	OrthoFinder output from all 47 species
AMTR_s00047p00140240	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Adi_g005572	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g117976	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Adi_g118076	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g02937	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ala_g00994	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ala_g38500	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Als_g55381	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aob_g04061	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g02035	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Aop_g10465	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Aspi01Gene05457.t1	Aspi01Gene05457	component *(eL8) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene23106.t1	Aspi01Gene23106	component *(eL8) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aspi01Gene25478.t1	Aspi01Gene25478	component *(eL8) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0102.g044550	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Azfi_s0148.g053103	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Cba_g10534	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cba_g10535	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cba_g46928	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Ceric.08G064100.1	Ceric.08G064100	component *(eL8) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Ceric.28G063900.1	Ceric.28G063900	component *(eL8) of large ribosomal-subunit (LSU)...	0.36	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000128.22	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.39	OrthoFinder output from all 47 species
Cre12.g529651	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Dac_g12130	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Dac_g12131	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g03427	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g30506	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Dde_g01249	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g04422	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ehy_g17204	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01008585001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.4	OrthoFinder output from all 47 species
GSVIVT01033050001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	OrthoFinder output from all 47 species
GSVIVT01036540001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	OrthoFinder output from all 47 species
Gb_36761	No alias	component RPL7a of LSU proteome component	0.3	OrthoFinder output from all 47 species
Gb_36922	No alias	component RPL7a of LSU proteome component	0.18	OrthoFinder output from all 47 species
LOC_Os08g23710.1	LOC_Os08g23710	component RPL7a of LSU proteome component	0.28	OrthoFinder output from all 47 species
LOC_Os09g32976.1	LOC_Os09g32976	component RPL7a of LSU proteome component	0.39	OrthoFinder output from all 47 species
Len_g06165	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Len_g31217	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g25988	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_109678g0010	No alias	component RPL7a of LSU proteome component	0.3	OrthoFinder output from all 47 species
MA_648702g0010	No alias	component RPL7a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp2g23250.1	No alias	component RPL7a of LSU proteome component	0.37	OrthoFinder output from all 47 species
Mp8g17650.1	No alias	component RPL7a of LSU proteome component	0.27	OrthoFinder output from all 47 species
Msp_g01446	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Nbi_g10842	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ore_g17079	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g02760	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g59570	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Pp3c26_330V3.1	Pp3c26_330	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.25	OrthoFinder output from all 47 species
Pp3c9_380V3.1	Pp3c9_380	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.2	OrthoFinder output from all 47 species
Ppi_g10717	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g16513	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ppi_g26369	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Ppi_g26716	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g54555	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013775	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021059	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g06600	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Sam_g09914	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Sam_g17532	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g28791	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Sam_g28887	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Sam_g32122	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo270545	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	OrthoFinder output from all 47 species
Solyc01g097760.3.1	Solyc01g097760	component RPL7a of LSU proteome component	0.13	OrthoFinder output from all 47 species
Solyc06g050120.3.1	Solyc06g050120	component RPL7a of LSU proteome component	0.15	OrthoFinder output from all 47 species
Solyc06g064460.4.1	Solyc06g064460	component RPL7a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g10426	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Spa_g48863	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Tin_g40004	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Tin_g42871	No alias	component *(eL8) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e010129_P001	Zm00001e010129	component RPL7a of LSU proteome component	0.42	OrthoFinder output from all 47 species
Zm00001e034633_P002	Zm00001e034633	component RPL7a of LSU proteome component	0.42	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	113	202

External Links

No external refs found!

AT3G62870

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation