AT3G61630 (CRF6)

Aliases : CRF6

Description : cytokinin response factor 6

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G61630

Target	Alias	Description	ECC score	Gene Family Method
AT3G23240	ERF1, ATERF1	ethylene response factor 1	0.04	OrthoFinder output from all 47 species
AT4G13620	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G18450	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G39780	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G07310	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G13910	LEP	Integrase-type DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G61890	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Aev_g00499	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g04104	TINY2	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g32688	RAP2.11	transcription factor *(ERN1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10058	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g39098	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g52359	TINY2	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g54778	DEAR2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g60789	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g62202	No alias	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g38999	ORA47	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene03162.t1	Aspi01Gene03162	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene17529.t1	RAP2.11, Aspi01Gene17529	transcription factor *(ERN1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene24402.t1	DEAR2, Aspi01Gene24402	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene25595.t1	Aspi01Gene25595	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene29233.t1	Rap2.6L, Aspi01Gene29233	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene34453.t1	Aspi01Gene34453	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene39110.t1	TINY2, Aspi01Gene39110	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene41136.t1	CRF3, Aspi01Gene41136	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene47230.t1	TINY2, Aspi01Gene47230	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene47263.t1	tny, Aspi01Gene47263	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene49926.t1	ATERF12, ERF12,...	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene53919.t1	Aspi01Gene53919	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0040.g026640	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g13419	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g16817	RAP2.4	subgroup ERF-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g26091	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g60740	RAP2.11	transcription factor *(ERN1) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g09467	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g11890	Rap2.6L	subgroup ERF-X transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g21287	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g31512	DREB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g33212	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Dcu_g05445	No alias	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Dcu_g05508	No alias	subgroup ERF-VI transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g02414	ERF72, EBP, ATEBP, RAP2.3	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ehy_g08401	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g10951	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ehy_g29593	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01004798001	ERF-1, ATERF-1	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01013931001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.06	OrthoFinder output from all 47 species
GSVIVT01016684001	RAP2.12	Ethylene-responsive transcription factor RAP2-12...	0.04	OrthoFinder output from all 47 species
GSVIVT01018270001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
GSVIVT01021146001	ERF-1, ATERF-1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
Gb_06407	No alias	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Gb_06408	No alias	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Gb_26096	HRE2	Ethylene-responsive transcription factor RAP2-3...	0.03	OrthoFinder output from all 47 species
Gb_26738	DREB26	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os01g54890.1	ERF-1, ATERF-1,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
LOC_Os03g22170.1	HRE2, LOC_Os03g22170	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os06g03670.1	DREB1A, ATCBF3,...	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
LOC_Os07g42510.1	RAP2.12, LOC_Os07g42510	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
LOC_Os09g11460.1	HRE1, LOC_Os09g11460	Ethylene-responsive transcription factor ERF073...	0.04	OrthoFinder output from all 47 species
LOC_Os09g13940.2	LOC_Os09g13940	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
LOC_Os10g41330.1	ERF-6-6, ERF6,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Len_g14523	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10274g0010	Rap2.6L	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_116185g0010	ERF-1, ATERF-1	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_16778g0010	DREB2A, DREB2	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
MA_27309g0010	ERF-1, ATERF-1	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_3073g0010	WIN1, SHN1	transcription factor (ERF). SHN-type cutin and suberin...	0.04	OrthoFinder output from all 47 species
MA_40048g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_4032g0010	ATERF3, ERF3	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
MA_4182g0010	Rap2.6L	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_937270g0010	ERF2, ATERF2, ATERF-2	Ethylene-responsive transcription factor 1A...	0.04	OrthoFinder output from all 47 species
Msp_g42164	DEAR1, CEJ1, ATERF#011	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g02156	No alias	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g04870	No alias	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g15653	DEAR4, RAP2.10	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Pir_g24895	No alias	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g35430	ERF1, ATERF1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g47053	RRTF1	subgroup ERF-X transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g15298	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.05	OrthoFinder output from all 47 species
Pnu_g26066	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g02117	HRE1	subgroup ERF-VI transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g07532	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g11929	DEAR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13453	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15852	No alias	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Ppi_g41606	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g55442	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Solyc01g108240.3.1	RRTF1, Solyc01g108240	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc03g093610.1.1	ERF-1, ATERF-1,...	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Solyc04g054910.4.1	Solyc04g054910	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Solyc05g052030.1.1	Solyc05g052030	transcription factor (ERF)	0.06	OrthoFinder output from all 47 species
Solyc06g054630.3.1	Solyc06g054630	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc06g082590.1.1	CRF4, Solyc06g082590	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Solyc07g053740.1.1	ATERF4, RAP2.5,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc09g089930.3.1	ERF1, ATERF1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc10g050970.1.1	RRTF1, Solyc10g050970	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Spa_g21730	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g27989	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29088	Rap2.6L	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g30473	Rap2.6L	subgroup ERF-X transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g52144	DEAR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00486	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Tin_g21202	No alias	subgroup ERF-I transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e015429_P001	Zm00001e015429	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Zm00001e026192_P001	HRE2, Zm00001e026192	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e033790_P001	Zm00001e033790	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IGI	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042991	obsolete transcription factor import into nucleus	IDA	Interproscan
BP	GO:0042991	obsolete transcription factor import into nucleus	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048825	cotyledon development	IMP	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005221	intracellular cyclic nucleotide activated monoatomic cation channel activity	IEP	HCCA
MF	GO:0005242	inward rectifier potassium channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005249	voltage-gated potassium channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
MF	GO:0009916	alternative oxidase activity	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	HCCA
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0022843	voltage-gated monoatomic cation channel activity	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0042631	cellular response to water deprivation	IEP	HCCA
MF	GO:0043855	cyclic nucleotide-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0070887	cellular response to chemical stimulus	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071229	cellular response to acid chemical	IEP	HCCA
BP	GO:0071462	cellular response to water stimulus	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
MF	GO:0099094	ligand-gated monoatomic cation channel activity	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	104	153

External Links

No external refs found!

AT3G61630 (CRF6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation