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  5. AT3G58720

AT3G58720


Description : RING/U-box superfamily protein


Gene families : OG0002683 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002683_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58720
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Adi_g007489 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18694 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s2272.g110110 No alias not classified & original description: CDS=1-720 0.03 OrthoFinder output from all 47 species
Cba_g08152 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g52460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G047800.1 Ceric.35G047800 not classified & original description: pacid=50581496... 0.04 OrthoFinder output from all 47 species
Dde_g15875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020763001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01020764001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
GSVIVT01020765001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.15 OrthoFinder output from all 47 species
Len_g16100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_3413240g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_5409604g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g07929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20627 RIN2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc07g055330.3.1 Solyc07g055330 no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
Spa_g10051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003008 system process IEP HCCA
BP GO:0003013 circulatory system process IEP HCCA
BP GO:0003018 vascular process in circulatory system IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0005242 inward rectifier potassium channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005249 voltage-gated potassium channel activity IEP HCCA
MF GO:0005267 potassium channel activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0006878 cellular copper ion homeostasis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008506 sucrose:proton symporter activity IEP HCCA
MF GO:0008515 sucrose transmembrane transporter activity IEP HCCA
BP GO:0008643 carbohydrate transport IEP HCCA
BP GO:0009625 response to insect IEP HCCA
MF GO:0009669 sucrose:monoatomic cation symporter activity IEP HCCA
BP GO:0009746 response to hexose IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009915 phloem sucrose loading IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010088 phloem development IEP HCCA
BP GO:0010232 vascular transport IEP HCCA
BP GO:0010233 phloem transport IEP HCCA
BP GO:0010363 regulation of plant-type hypersensitive response IEP HCCA
BP GO:0010439 regulation of glucosinolate biosynthetic process IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015154 disaccharide transmembrane transporter activity IEP HCCA
MF GO:0015157 oligosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0015766 disaccharide transport IEP HCCA
BP GO:0015770 sucrose transport IEP HCCA
BP GO:0015772 oligosaccharide transport IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022843 voltage-gated monoatomic cation channel activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030551 cyclic nucleotide binding IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034284 response to monosaccharide IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0042762 regulation of sulfur metabolic process IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
BP GO:0043255 regulation of carbohydrate biosynthetic process IEP HCCA
MF GO:0043394 proteoglycan binding IEP HCCA
BP GO:0043455 regulation of secondary metabolic process IEP HCCA
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0055078 sodium ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
MF GO:0099094 ligand-gated monoatomic cation channel activity IEP HCCA
BP GO:0110126 phloem loading IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 143 185
No external refs found!