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  5. AT3G56140

AT3G56140


Description : Protein of unknown function (DUF399 and DUF3411)


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56140
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Aop_g12949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G078500.1 Ceric.22G078500 not classified & original description: pacid=50614469... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.104 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021617.18 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g06291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032197001 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os05g39680.1 LOC_Os05g39680 component SNX2 of Retromer protein recycling complex 0.06 OrthoFinder output from all 47 species
Msp_g10525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g065490.2.1 Solyc11g065490 Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g52656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009543 chloroplast thylakoid lumen ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004760 serine-pyruvate transaminase activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008453 alanine-glyoxylate transaminase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016688 L-ascorbate peroxidase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
CC GO:0031463 Cul3-RING ubiquitin ligase complex IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
MF GO:0050281 serine-glyoxylate transaminase activity IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0090342 obsolete regulation of cell aging IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR007314 Cofac_haem-bd_dom 152 372
IPR021825 RETICULATA-related 479 663
No external refs found!