AT3G54770

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54770
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00212100	evm_27.TU.AmTr_v1...	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AMTR_s00080p00053460	evm_27.TU.AmTr_v1...	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT1G22330	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.08	OrthoFinder output from all 47 species
AT1G22910	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	OrthoFinder output from all 47 species
AT5G53720	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	OrthoFinder output from all 47 species
Ala_g18787	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene39475.t2	Aspi01Gene39475	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene51493.t1	Aspi01Gene51493	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0019.g015267	No alias	not classified & original description: CDS=1-609	0.03	OrthoFinder output from all 47 species
Cba_g11789	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.23G019900.1	Ceric.23G019900	not classified & original description: pacid=50610174...	0.04	OrthoFinder output from all 47 species
Dde_g10402	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08946	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g08965	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10873	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g20779	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01027434001	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_30439	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Gb_39269	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os01g72834.1	LOC_Os01g72834	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Len_g15889	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_10429182g0010	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
MA_1682g0010	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp8g04430.1	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Nbi_g05687	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g02066	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g03322	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g05821	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021063	No alias	not classified & original description: CDS=1090-1812	0.03	OrthoFinder output from all 47 species
Solyc04g049920.4.1	Solyc04g049920	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.14	OrthoFinder output from all 47 species
Solyc04g074310.4.1	Solyc04g074310	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g25385	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001294_P001	Zm00001e001294	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
Zm00001e015892_P001	Zm00001e015892	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e023856_P001	Zm00001e023856	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Zm00001e030837_P006	Zm00001e030837	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009414	response to water deprivation	IMP	Interproscan
BP	GO:0009415	response to water	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010029	regulation of seed germination	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
CC	GO:0000323	lytic vacuole	IEP	HCCA
CC	GO:0000325	plant-type vacuole	IEP	HCCA
MF	GO:0003756	protein disulfide isomerase activity	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
MF	GO:0008446	GDP-mannose 4,6-dehydratase activity	IEP	HCCA
MF	GO:0008825	cyclopropane-fatty-acyl-phospholipid synthase activity	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009828	plant-type cell wall loosening	IEP	HCCA
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	HCCA
CC	GO:0009925	basal plasma membrane	IEP	HCCA
BP	GO:0009958	positive gravitropism	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transmembrane transport	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
CC	GO:0042807	central vacuole	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA
BP	GO:0046685	response to arsenic-containing substance	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
CC	GO:0098590	plasma membrane region	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098661	inorganic anion transmembrane transport	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1902025	nitrate import	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	19	76

External Links

No external refs found!

AT3G54770

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation