AT3G52980

Description : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G52980
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
Aev_g11932	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0076.g037780	No alias	not classified & original description: CDS=1-1272	0.02	OrthoFinder output from all 47 species
Ehy_g07818	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g23635	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_479847g0010	No alias	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Pnu_g16096	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019953	sexual reproduction	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025605	OST-HTH/LOTUS_dom	199	278
IPR000504	RRM_dom	316	361

External Links

No external refs found!