AT3G49660

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0001739 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001739_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G49660

Target	Alias	Description	ECC score	Gene Family Method
Adi_g088773	No alias	substrate adaptor *(DHU1) of CUL4-based ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000378.20	No alias	Chromatin organisation.histone modifications.histone...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000480.13	No alias	Dynein assembly factor with WDR repeat domains 1...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020902.59	No alias	Transcription initiation factor TFIID subunit 5...	0.02	OrthoFinder output from all 47 species
Cre08.g367650	No alias	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
Cre12.g552900	HIRA	COMPASS-like H3K4 histone methylase component WDR5A...	0.01	OrthoFinder output from all 47 species
Gb_16393	No alias	component WDR5 of COMPASS histone trimethylation complex	0.02	OrthoFinder output from all 47 species
Smo169971	No alias	Chromatin organisation.histone modifications.histone...	0.04	OrthoFinder output from all 47 species
Solyc02g091790.3.1	Solyc02g091790	component WDR5 of COMPASS histone trimethylation complex	0.03	OrthoFinder output from all 47 species
Zm00001e005534_P002	Zm00001e005534	component WDR5 of COMPASS histone trimethylation complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISS	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005834	heterotrimeric G-protein complex	ISS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007186	G protein-coupled receptor signaling pathway	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034708	methyltransferase complex	None	Extended
CC	GO:0035097	histone methyltransferase complex	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042393	histone binding	IDA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0048188	Set1C/COMPASS complex	IPI	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905360	GTPase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	232	270
IPR001680	WD40_repeat	145	183
IPR001680	WD40_repeat	188	226
IPR001680	WD40_repeat	276	312
IPR001680	WD40_repeat	17	49
IPR001680	WD40_repeat	104	141
IPR001680	WD40_repeat	62	99

External Links

No external refs found!

AT3G49660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation