AT3G49250 (IDN1, DMS3)

Aliases : IDN1, DMS3

Description : defective in meristem silencing 3

Gene families : OG0001616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001616_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G49250

Target	Alias	Description	ECC score	Gene Family Method
MA_10426383g0010	No alias	no description available(sp\|f4kfs5\|gmi1_arath : 233.0)	0.07	OrthoFinder output from all 47 species
Mp7g15910.1	GMI1	no description available(sp\|f4kfs5\|gmi1_arath : 444.0)	0.04	OrthoFinder output from all 47 species
Pp3c22_17800V3.1	IDN1, DMS3, Pp3c22_17800	gamma-irradiation and mitomycin c induced 1	0.01	OrthoFinder output from all 47 species
Sam_g18057	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g35723	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g083210.3.1	IDN1, DMS3,...	component DMS3 of DNA methylation accessory complex (DDR)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	RCA	Interproscan
BP	GO:0000724	double-strand break repair via homologous recombination	RCA	Interproscan
BP	GO:0000725	recombinational repair	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	RCA	Interproscan
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IMP	Interproscan
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007267	cell-cell signaling	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009555	pollen development	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	RCA	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	ta-siRNA processing	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016441	post-transcriptional gene silencing	None	Extended
BP	GO:0016444	somatic cell DNA recombination	RCA	Interproscan
BP	GO:0016569	obsolete covalent chromatin modification	RCA	Interproscan
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0030422	siRNA processing	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	IMP	Interproscan
BP	GO:0031047	RNA-mediated gene silencing	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	None	Extended
BP	GO:0035196	miRNA processing	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	HCCA
CC	GO:0000418	RNA polymerase IV complex	IEP	HCCA
CC	GO:0000419	RNA polymerase V complex	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006768	biotin metabolic process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0008710	8-amino-7-oxononanoate synthase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009102	biotin biosynthetic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019252	starch biosynthetic process	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035197	siRNA binding	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0061980	regulatory RNA binding	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G49250 (IDN1, DMS3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation