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  5. AT3G48810

AT3G48810


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G48810
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.01 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.01 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.01 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.01 OrthoFinder output from all 47 species
Ore_g27863 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g077650.2.1 Solyc02g077650 Pentatricopeptide repeat-containing protein At5g46100... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0048445 carpel morphogenesis RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
BP GO:0002218 activation of innate immune response IEP HCCA
BP GO:0002253 activation of immune response IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0003923 GPI-anchor transamidase activity IEP HCCA
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0007032 endosome organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009866 induced systemic resistance, ethylene mediated signaling pathway IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0047769 arogenate dehydratase activity IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0071241 cellular response to inorganic substance IEP HCCA
BP GO:0071248 cellular response to metal ion IEP HCCA
BP GO:0071281 cellular response to iron ion IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0080171 lytic vacuole organization IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1990019 protein storage vacuole organization IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 318 344
IPR002885 Pentatricopeptide_repeat 564 587
IPR002885 Pentatricopeptide_repeat 420 469
IPR002885 Pentatricopeptide_repeat 598 645
IPR002885 Pentatricopeptide_repeat 350 399
IPR002885 Pentatricopeptide_repeat 491 540
IPR002885 Pentatricopeptide_repeat 244 293
IPR002885 Pentatricopeptide_repeat 179 227
IPR002885 Pentatricopeptide_repeat 98 155
No external refs found!