AT3G46620


Description : zinc finger (C3HC4-type RING finger) family protein


Gene families : OG0011152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011152_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G46620

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00250160 RHC2A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01024920001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 OrthoFinder output from all 47 species
LOC_Os01g74040.1 RHC2A, LOC_Os01g74040 Probable E3 ubiquitin-protein ligase RHC2A... 0.06 OrthoFinder output from all 47 species
LOC_Os03g16480.1 LOC_Os03g16480 E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g01940.1 LOC_Os05g01940 elicitor peptide precursor (proPEP) 0.08 OrthoFinder output from all 47 species
Solyc06g005650.2.1 Solyc06g005650 E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Zm00001e001202_P001 Zm00001e001202 E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e027652_P001 Zm00001e027652 E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e029660_P001 Zm00001e029660 E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e038493_P001 Zm00001e038493 E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0002679 respiratory burst involved in defense response RCA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009414 response to water deprivation IMP Interproscan
BP GO:0009611 response to wounding RCA Interproscan
BP GO:0009612 response to mechanical stimulus RCA Interproscan
BP GO:0009693 ethylene biosynthetic process RCA Interproscan
BP GO:0009737 response to abscisic acid IMP Interproscan
BP GO:0009873 ethylene-activated signaling pathway RCA Interproscan
BP GO:0010200 response to chitin IEP Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0035556 intracellular signal transduction RCA Interproscan
BP GO:0051865 protein autoubiquitination IDA Interproscan
Type GO Term Name Evidence Source
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0004709 MAP kinase kinase kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008219 cell death IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009694 jasmonic acid metabolic process IEP HCCA
BP GO:0009695 jasmonic acid biosynthetic process IEP HCCA
BP GO:0010449 root meristem growth IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
BP GO:0022622 root system development IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0043069 negative regulation of programmed cell death IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0060548 negative regulation of cell death IEP HCCA
BP GO:0070417 cellular response to cold IEP HCCA
BP GO:0080167 response to karrikin IEP HCCA
BP GO:1902065 response to L-glutamate IEP HCCA
InterPro domains Description Start Stop
IPR010543 DUF1117 274 393
IPR001841 Znf_RING 214 256
IPR039525 RNF126-like_zinc-ribbon 29 65
No external refs found!