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  5. AT3G46580

AT3G46580 (MBD05, MBD5, ATMBD5)


Aliases : MBD05, MBD5, ATMBD5

Description : methyl-CPG-binding domain protein 5


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G46580
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Als_g15671 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12193.t1 Aspi01Gene12193 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15846.t1 Aspi01Gene15846 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67878.t1 MBD05, MBD5,... methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09713 MBD05, MBD5, ATMBD5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04554 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04569 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13428 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_12376 MBD05, MBD5, ATMBD5 methylation reader (MBD5-6) 0.03 OrthoFinder output from all 47 species
Msp_g37242 No alias methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01006 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008327 methyl-CpG binding IDA Interproscan
MF GO:0008327 methyl-CpG binding ISS Interproscan
CC GO:0010370 perinucleolar chromocenter IDA Interproscan
MF GO:0019899 enzyme binding IPI Interproscan
MF GO:0043621 protein self-association IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0043076 megasporocyte nucleus IEP HCCA
CC GO:0043078 polar nucleus IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 26 136
No external refs found!