AT3G46560 (TIM9, emb2474)

Aliases : TIM9, emb2474

Description : Tim10/DDP family zinc finger protein

Gene families : OG0006268 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006268_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G46560

Target	Alias	Description	ECC score	Gene Family Method
Ceric.12G010600.1	TIM9, emb2474,...	component *(Tim9) of inner mitochondrion membrane TIM22...	0.06	OrthoFinder output from all 47 species
GSVIVT01024961001	No alias	Protein translocation.mitochondrion.inner mitochondrion...	0.04	OrthoFinder output from all 47 species
GSVIVT01034172001	No alias	Protein translocation.mitochondrion.inner mitochondrion...	0.07	OrthoFinder output from all 47 species
LOC_Os05g02050.1	LOC_Os05g02050	component Tim9 of inner mitochondrion membrane TIM22...	0.04	OrthoFinder output from all 47 species
LOC_Os12g38310.1	LOC_Os12g38310	component Tim9 of inner mitochondrion membrane TIM22...	0.23	OrthoFinder output from all 47 species
Len_g53476	TIM9, emb2474	component *(Tim9) of inner mitochondrion membrane TIM22...	0.04	OrthoFinder output from all 47 species
Lfl_g36802	TIM9, emb2474	component *(Tim9) of inner mitochondrion membrane TIM22...	0.05	OrthoFinder output from all 47 species
Mp4g24090.1	No alias	component Tim9 of inner mitochondrion membrane TIM22...	0.04	OrthoFinder output from all 47 species
Nbi_g28275	TIM9, emb2474	component *(Tim9) of inner mitochondrion membrane TIM22...	0.03	OrthoFinder output from all 47 species
Pp3c24_15930V3.1	Pp3c24_15930	Tim10/DDP family zinc finger protein	0.11	OrthoFinder output from all 47 species
Ppi_g22495	TIM9, emb2474	component *(Tim9) of inner mitochondrion membrane TIM22...	0.03	OrthoFinder output from all 47 species
Sam_g35144	No alias	component *(Tim9) of inner mitochondrion membrane TIM22...	0.08	OrthoFinder output from all 47 species
Smo74249	TIM9, emb2474	Protein translocation.mitochondrion.inner mitochondrion...	0.05	OrthoFinder output from all 47 species
Solyc10g086510.2.1	TIM9, emb2474,...	component Tim9 of inner mitochondrion membrane TIM22...	0.1	OrthoFinder output from all 47 species
Tin_g41329	TIM9, emb2474	component *(Tim9) of inner mitochondrion membrane TIM22...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005743	mitochondrial inner membrane	ISS	Interproscan
CC	GO:0005758	mitochondrial intermembrane space	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006626	protein targeting to mitochondrion	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006839	mitochondrial transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008320	protein transmembrane transporter activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009853	photorespiration	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015450	protein-transporting ATPase activity	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022884	macromolecule transmembrane transporter activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031966	mitochondrial membrane	None	Extended
CC	GO:0031970	organelle envelope lumen	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
BP	GO:0043094	cellular metabolic compound salvage	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0070585	protein localization to mitochondrion	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072655	establishment of protein localization to mitochondrion	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140318	protein transporter activity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0001072	transcription antitermination factor activity, RNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
BP	GO:0031554	regulation of termination of DNA-templated transcription	IEP	HCCA
BP	GO:0031564	transcription antitermination	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004217	Tim10-like	25	84

External Links

No external refs found!

AT3G46560 (TIM9, emb2474)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation