AT3G46510 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : plant U-box 13

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G46510

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00171260	PUB14, ATPUB14,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.07	OrthoFinder output from all 47 species
Adi_g023452	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g026489	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057743	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g089259	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g05159	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g09883	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07682	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g19192	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g60695	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44183.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44184.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene44185.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.04G103500.1	PUB13, ATPUB13,...	not classified & original description: pacid=50631830...	0.02	OrthoFinder output from all 47 species
Ceric.08G025000.1	Ceric.08G025000	not classified & original description: pacid=50638405...	0.03	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.04	OrthoFinder output from all 47 species
Ceric.34G042900.1	PUB13, ATPUB13,...	not classified & original description: pacid=50623547...	0.03	OrthoFinder output from all 47 species
Ceric.35G012000.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g12067	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12068	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g13651	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g40757	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06164	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g29208	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01006112001	PUB8, B80	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01021265001	ATPUB17, PUB17	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01023893001	PUB15	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01036669001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_10627	PUB8, B80	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_20805	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os03g16824.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
LOC_Os12g38210.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Len_g09306	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g20959	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08019	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g13185	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g14639	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03090	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g14682	ATPUB45, PUB45	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07686	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g39748	PUB13, ATPUB13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g12553	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g08627	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g11362	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g25175	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g27911	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo61948	PUB13, ATPUB13	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc01g096460.2.1	Solyc01g096460	U-box domain-containing protein 4 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g077850.3.1	Solyc04g077850	U-box domain-containing protein 4 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Spa_g07376	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g10462	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g07352	ATPUB17, PUB17	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g16801	PUB13, ATPUB13	E3 ubiquiTin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g21993	PUB13, ATPUB13	E3 ubiquiTin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002954_P001	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006486	protein glycosylation	None	Extended
BP	GO:0006487	protein N-linked glycosylation	RCA	Interproscan
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0018377	protein myristoylation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	RCA	Interproscan
MF	GO:0033612	receptor serine/threonine kinase binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042742	defense response to bacterium	IGI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046777	protein autophosphorylation	RCA	Interproscan
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IPI	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004143	diacylglycerol kinase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009720	detection of hormone stimulus	IEP	HCCA
BP	GO:0009726	detection of endogenous stimulus	IEP	HCCA
BP	GO:0009727	detection of ethylene stimulus	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009757	hexose mediated signaling	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
BP	GO:0010255	glucose mediated signaling pathway	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
MF	GO:0017050	D-erythro-sphingosine kinase activity	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
BP	GO:0030832	regulation of actin filament length	IEP	HCCA
BP	GO:0030833	regulation of actin filament polymerization	IEP	HCCA
BP	GO:0030834	regulation of actin filament depolymerization	IEP	HCCA
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	HCCA
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	HCCA
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0032271	regulation of protein polymerization	IEP	HCCA
BP	GO:0032272	negative regulation of protein polymerization	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051017	actin filament bundle assembly	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051693	actin filament capping	IEP	HCCA
BP	GO:0061572	actin filament bundle organization	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071369	cellular response to ethylene stimulus	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1901879	regulation of protein depolymerization	IEP	HCCA
BP	GO:1901880	negative regulation of protein depolymerization	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	548	587
IPR000225	Armadillo	383	422
IPR000225	Armadillo	466	504
IPR003613	Ubox_domain	256	326

External Links

No external refs found!

AT3G46510 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation