AT3G23890 (TOPII, ATTOPII)


Aliases : TOPII, ATTOPII

Description : topoisomerase II


Gene families : OG0002559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002559_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G23890
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00101630 TOPII, ATTOPII,... Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.12 OrthoFinder output from all 47 species
Ala_g25823 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g04680 TOPII, ATTOPII not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g14096 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g44163 TOPII, ATTOPII not classified & original description: none 0.15 OrthoFinder output from all 47 species
Aop_g14194 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.18 OrthoFinder output from all 47 species
Aspi01Gene00301.t1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene03757.t1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description: none 0.12 OrthoFinder output from all 47 species
Azfi_s0248.g060132 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: CDS=3554-4336 0.06 OrthoFinder output from all 47 species
Ceric.22G001800.1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description:... 0.2 OrthoFinder output from all 47 species
Ceric.22G002000.1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description:... 0.22 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021432.55 TOPII, ATTOPII DNA topoisomerase 2 OS=Pisum sativum 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.1 TOPII, ATTOPII DNA topoisomerase 2 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.2 TOPII, ATTOPII DNA topoisomerase 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cre01.g009250 TOPII, ATTOPII Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.07 OrthoFinder output from all 47 species
Dac_g12747 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g04147 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.13 OrthoFinder output from all 47 species
GSVIVT01032138001 TOPII, ATTOPII Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.27 OrthoFinder output from all 47 species
Gb_11673 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.17 OrthoFinder output from all 47 species
Gb_12824 TOPII, ATTOPII DNA topoisomerase 2 OS=Pisum sativum (sp|o24308|top2_pea : 112.0) 0.18 OrthoFinder output from all 47 species
LOC_Os02g47150.1 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.11 OrthoFinder output from all 47 species
Len_g11702 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g32193 TOPII, ATTOPII not classified & original description: none 0.15 OrthoFinder output from all 47 species
MA_133272g0010 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.14 OrthoFinder output from all 47 species
MA_6634g0010 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.16 OrthoFinder output from all 47 species
Mp3g13420.1 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.12 OrthoFinder output from all 47 species
Msp_g37198 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.2 OrthoFinder output from all 47 species
Nbi_g07573 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.2 OrthoFinder output from all 47 species
Ore_g33256 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g03282 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025783 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: CDS=115-4635 0.05 OrthoFinder output from all 47 species
Sam_g08991 No alias DNA topoisomerase *(TOP2) & original description: none 0.12 OrthoFinder output from all 47 species
Smo127267 TOPII, ATTOPII Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.1 OrthoFinder output from all 47 species
Smo98330 TOPII, ATTOPII Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.1 OrthoFinder output from all 47 species
Solyc01g087500.3.1 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.17 OrthoFinder output from all 47 species
Spa_g02147 TOPII, ATTOPII not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g50976 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g55866 TOPII, ATTOPII not classified & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g11875 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.15 OrthoFinder output from all 47 species
Zm00001e015542_P001 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.17 OrthoFinder output from all 47 species
Zm00001e023296_P001 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Interproscan
BP GO:0000712 resolution of meiotic recombination intermediates IBA Interproscan
CC GO:0000795 synaptonemal complex IBA Interproscan
BP GO:0000819 sister chromatid segregation IBA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003916 DNA topoisomerase activity ISS Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity ISS Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IBA Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006259 DNA metabolic process ISS Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-templated DNA replication IBA Interproscan
BP GO:0006265 DNA topological change ISS Interproscan
BP GO:0006265 DNA topological change IBA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006312 mitotic recombination IBA Interproscan
BP GO:0007059 chromosome segregation ISS Interproscan
MF GO:0008094 ATP-dependent activity, acting on DNA ISS Interproscan
MF GO:0008094 ATP-dependent activity, acting on DNA IBA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex ISS Interproscan
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IBA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009957 epidermal cell fate specification RCA Interproscan
BP GO:0010583 response to cyclopentenone RCA Interproscan
BP GO:0016458 obsolete gene silencing RCA Interproscan
BP GO:0016572 obsolete histone phosphorylation RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0044774 mitotic DNA integrity checkpoint signaling IBA Interproscan
BP GO:0051225 spindle assembly RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP HCCA
BP GO:0000212 meiotic spindle organization IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
MF GO:0000400 four-way junction DNA binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
CC GO:0000794 condensed nuclear chromosome IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
BP GO:0000912 assembly of actomyosin apparatus involved in cytokinesis IEP HCCA
BP GO:0000914 phragmoplast assembly IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005871 kinesin complex IEP HCCA
CC GO:0005872 minus-end kinesin complex IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007053 spindle assembly involved in male meiosis IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme-linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007349 cellularization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
MF GO:0008574 plus-end-directed microtubule motor activity IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009558 embryo sac cellularization IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009971 anastral spindle assembly involved in male meiosis IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010342 endosperm cellularization IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
MF GO:0032137 guanine/thymine mispair binding IEP HCCA
MF GO:0032138 single base insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032301 MutSalpha complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032506 cytokinetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045910 negative regulation of DNA recombination IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0055046 microgametogenesis IEP HCCA
BP GO:0055048 anastral spindle assembly IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0080175 phragmoplast microtubule organization IEP HCCA
BP GO:0090306 meiotic spindle assembly IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902407 assembly of actomyosin apparatus involved in mitotic cytokinesis IEP HCCA
BP GO:1902410 mitotic cytokinetic process IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
InterPro domains Description Start Stop
IPR002205 Topo_IIA_dom_A 702 1163
IPR003594 HATPase_C 78 225
IPR006171 TOPRIM_domain 457 555
IPR013506 Topo_IIA_bsu_dom2 269 427
IPR031660 TOPRIM_C 571 699
No external refs found!