Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT3G22670 | |
Cluster | HCCA: Cluster_120 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00142p00073110 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
AT2G27800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
Aev_g03187 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g11091 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g11133 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g15608 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g10252 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g36532 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g07047 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
Gb_20376 | No alias | group-II intron mitochondrial splicing factor (MISF68) | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g07415 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g08820 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0021.g008361 | No alias | not classified & original description: CDS=1-1977 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g17038 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g008330.3.1 | Solyc05g008330 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e036197_P001 | Zm00001e036197 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005739 | mitochondrion | ISM | Interproscan |
BP | GO:0008150 | biological_process | ND | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000030 | mannosyltransferase activity | IEP | HCCA |
CC | GO:0000815 | ESCRT III complex | IEP | HCCA |
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0004407 | histone deacetylase activity | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006505 | GPI anchor metabolic process | IEP | HCCA |
BP | GO:0006506 | GPI anchor biosynthetic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006626 | protein targeting to mitochondrion | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006839 | mitochondrial transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009292 | horizontal gene transfer | IEP | HCCA |
BP | GO:0009294 | DNA-mediated transformation | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0009944 | polarity specification of adaxial/abaxial axis | IEP | HCCA |
BP | GO:0010380 | regulation of chlorophyll biosynthetic process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | HCCA |
MF | GO:0019213 | deacetylase activity | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0030244 | cellulose biosynthetic process | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
MF | GO:0033558 | protein lysine deacetylase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
CC | GO:0036452 | ESCRT complex | IEP | HCCA |
BP | GO:0042138 | meiotic DNA double-strand break formation | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048564 | photosystem I assembly | IEP | HCCA |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
MF | GO:0051751 | alpha-1,4-mannosyltransferase activity | IEP | HCCA |
BP | GO:0065001 | specification of axis polarity | IEP | HCCA |
BP | GO:0070585 | protein localization to mitochondrion | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | HCCA |
BP | GO:0090056 | regulation of chlorophyll metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901401 | regulation of tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:1901463 | regulation of tetrapyrrole biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 400 | 461 |
IPR002885 | Pentatricopeptide_repeat | 168 | 195 |
IPR002885 | Pentatricopeptide_repeat | 241 | 264 |
IPR002885 | Pentatricopeptide_repeat | 209 | 232 |
IPR002885 | Pentatricopeptide_repeat | 306 | 354 |
IPR002885 | Pentatricopeptide_repeat | 482 | 511 |
IPR002885 | Pentatricopeptide_repeat | 269 | 300 |
No external refs found! |