AT3G20710

Description : F-box family protein

Gene families : OG0001907 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001907_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G20710
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AT1G11620	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT1G11810	No alias	F-box associated ubiquitination effector family protein	0.03	OrthoFinder output from all 47 species
AT1G32140	No alias	F-box family protein	0.04	OrthoFinder output from all 47 species
AT1G54550	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT1G59680	EDA1	F-box associated ubiquitination effector family protein	0.08	OrthoFinder output from all 47 species
AT1G62270	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from all 47 species
AT1G66490	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT1G67450	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT2G24510	No alias	F-box associated ubiquitination effector family protein	0.04	OrthoFinder output from all 47 species
AT2G33655	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT2G38590	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from all 47 species
AT3G13830	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from all 47 species
AT3G16820	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from all 47 species
AT3G17480	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT3G17500	No alias	F-box family protein	0.06	OrthoFinder output from all 47 species
AT3G17540	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT3G17560	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT3G17570	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT3G18330	No alias	F-box family protein	0.03	OrthoFinder output from all 47 species
AT3G19560	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
AT3G19880	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT3G20030	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from all 47 species
AT3G20690	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT3G21120	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT3G22350	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT3G22421	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from all 47 species
AT3G22700	No alias	F-box and associated interaction domains-containing protein	0.11	OrthoFinder output from all 47 species
AT3G22770	No alias	F-box associated ubiquitination effector family protein	0.06	OrthoFinder output from all 47 species
AT3G22870	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT4G09870	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT4G10190	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT4G10740	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT4G33290	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT5G36200	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT5G36730	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT5G36820	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT5G41490	No alias	F-box associated ubiquitination effector family protein	0.07	OrthoFinder output from all 47 species
AT5G41500	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT5G41510	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT5G47300	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT5G51000	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009555	pollen development	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010315	auxin export across the plasma membrane	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048868	pollen tube development	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	3	42
IPR006527	F-box-assoc_dom_typ1	197	361

External Links

No external refs found!

AT3G20710

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation