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  5. AT3G20250

AT3G20250 (PUM5, APUM5)


Aliases : PUM5, APUM5

Description : pumilio 5


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G20250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00181800 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT3G10360 APUM4, PUM4 pumilio 4 0.02 OrthoFinder output from all 47 species
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07515.t1 APUM4, PUM4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05952 PUM3, APUM3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25094 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016236001 APUM4, PUM4 Pumilio homolog 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_23280 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_39566 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g57390.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g30615 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g05799 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15275 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g22833 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022409 APUM2, PUM2 not classified & original description: CDS=679-3840 0.04 OrthoFinder output from all 47 species
Sam_g10568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006487 protein N-linked glycosylation RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000302 response to reactive oxygen species IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004557 alpha-galactosidase activity IEP HCCA
MF GO:0004854 xanthine dehydrogenase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
BP GO:0006145 purine nucleobase catabolic process IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006672 ceramide metabolic process IEP HCCA
BP GO:0006677 glycosylceramide metabolic process IEP HCCA
BP GO:0006687 glycosphingolipid metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006809 nitric oxide biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008219 cell death IEP HCCA
MF GO:0008240 tripeptidyl-peptidase activity IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009636 response to toxic substance IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
BP GO:0010966 regulation of phosphate transport IEP HCCA
BP GO:0012501 programmed cell death IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016137 glycoside metabolic process IEP HCCA
BP GO:0016139 glycoside catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0017050 D-erythro-sphingosine kinase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0019377 glycolipid catabolic process IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030149 sphingolipid catabolic process IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042554 superoxide anion generation IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046110 xanthine metabolic process IEP HCCA
BP GO:0046113 nucleobase catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046209 nitric oxide metabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046466 membrane lipid catabolic process IEP HCCA
BP GO:0046477 glycosylceramide catabolic process IEP HCCA
BP GO:0046479 glycosphingolipid catabolic process IEP HCCA
BP GO:0046514 ceramide catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055062 phosphate ion homeostasis IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072523 purine-containing compound catabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1903795 regulation of inorganic anion transmembrane transport IEP HCCA
BP GO:2000185 regulation of phosphate transmembrane transport IEP HCCA
BP GO:2001057 reactive nitrogen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 814 843
IPR001313 Pumilio_RNA-bd_rpt 889 920
IPR001313 Pumilio_RNA-bd_rpt 737 759
IPR001313 Pumilio_RNA-bd_rpt 630 658
IPR001313 Pumilio_RNA-bd_rpt 703 732
IPR001313 Pumilio_RNA-bd_rpt 774 799
IPR001313 Pumilio_RNA-bd_rpt 846 879
IPR001313 Pumilio_RNA-bd_rpt 667 697
No external refs found!