AT3G19290 (AREB2, ABF4)

Aliases : AREB2, ABF4

Description : ABRE binding factor 4

Gene families : OG0000314 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G19290

Target	Alias	Description	ECC score	Gene Family Method
Adi_g001969	ABF1	bZIP class-A transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g008679	ABF1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g10271	AREB2, ABF4	bZIP class-A transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g37875	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02280	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g61507	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g05469	AREB2, ABF4	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene30620.t1	ABF1, Aspi01Gene30620	bZIP class-A transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.06G081700.1	AREB2, ABF4,...	bZIP class-A transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.19G009600.1	ABF2, ATAREB1,...	bZIP class-A transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g02694	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02975	DPBF3, AREB3	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g04420	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01009485001	ABF2, ATAREB1, AREB1	RNA biosynthesis.transcriptional activation.bZIP...	0.04	OrthoFinder output from all 47 species
Gb_16168	ABF2, ATAREB1, AREB1	transcription factor (bZIP)	0.05	OrthoFinder output from all 47 species
Gb_16382	ABF2, ATAREB1, AREB1	transcription factor (bZIP)	0.02	OrthoFinder output from all 47 species
Gb_38174	ABF2, ATAREB1, AREB1	transcription factor (bZIP)	0.03	OrthoFinder output from all 47 species
LOC_Os01g64730.1	GBF4, LOC_Os01g64730	transcription factor (bZIP)	0.02	OrthoFinder output from all 47 species
LOC_Os02g52780.1	ABF2, ATAREB1,...	transcription factor (bZIP)	0.03	OrthoFinder output from all 47 species
LOC_Os08g43600.1	FD-1, FD,...	transcription factor (bZIP)	0.02	OrthoFinder output from all 47 species
Len_g03850	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g18511	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g36884	ABF1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g46528	ABF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_18107g0010	ABF2, ATAREB1, AREB1	transcription factor (bZIP)	0.04	OrthoFinder output from all 47 species
Ore_g08399	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g11141	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g18050	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02561	DPBF5, ABF3	bZIP class-A transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g07472	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g078840.3.1	ABF2, ATAREB1,...	transcription factor (bZIP)	0.05	OrthoFinder output from all 47 species
Solyc11g044560.3.1	AREB2, ABF4,...	transcription factor (bZIP)	0.04	OrthoFinder output from all 47 species
Spa_g16760	ABF2, ATAREB1, AREB1	bZIP class-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003794_P001	ABF2, ATAREB1,...	transcription factor (bZIP)	0.03	OrthoFinder output from all 47 species
Zm00001e015956_P002	ABF2, ATAREB1,...	transcription factor (bZIP)	0.05	OrthoFinder output from all 47 species
Zm00001e019163_P004	GBF4, Zm00001e019163	transcription factor (bZIP)	0.04	OrthoFinder output from all 47 species
Zm00001e022136_P001	ABF2, ATAREB1,...	transcription factor (bZIP)	0.06	OrthoFinder output from all 47 species
Zm00001e035915_P001	DPBF4, ATBZIP12,...	transcription factor (bZIP)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IPI	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009410	response to xenobiotic stimulus	RCA	Interproscan
BP	GO:0009414	response to water deprivation	IEP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009612	response to mechanical stimulus	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IDA	Interproscan
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019722	calcium-mediated signaling	RCA	Interproscan
BP	GO:0019932	second-messenger-mediated signaling	None	Extended
BP	GO:0030968	endoplasmic reticulum unfolded protein response	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
BP	GO:0016569	obsolete covalent chromatin modification	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004827	bZIP	353	405

External Links

No external refs found!

AT3G19290 (AREB2, ABF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation