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  5. AT3G18340

AT3G18340


Description : F-box and associated interaction domains-containing protein


Gene families : OG0010373 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010373_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G18340
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G32430 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G47390 No alias F-box and associated interaction domains-containing protein 0.09 OrthoFinder output from all 47 species
AT1G51290 No alias F-box and associated interaction domains-containing protein 0.09 OrthoFinder output from all 47 species
AT1G58090 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from all 47 species
AT1G59630 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from all 47 species
AT2G14710 No alias F-box family protein 0.09 OrthoFinder output from all 47 species
AT3G16580 No alias F-box and associated interaction domains-containing protein 0.1 OrthoFinder output from all 47 species
AT3G16590 No alias F-box and associated interaction domains-containing protein 0.09 OrthoFinder output from all 47 species
AT3G59590 No alias jacalin lectin family protein 0.1 OrthoFinder output from all 47 species
AT3G59610 No alias F-box family protein / jacalin lectin family protein 0.11 OrthoFinder output from all 47 species
AT5G37040 No alias F-box family protein 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 6 36
IPR006527 F-box-assoc_dom_typ1 188 348
No external refs found!