AT3G13000

Description : Protein of unknown function, DUF547

Gene families : OG0000236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000236_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13000

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00048210	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
AMTR_s00025p00226120	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00106p00150110	evm_27.TU.AmTr_v1...	No description available	0.07	OrthoFinder output from all 47 species
AMTR_s00131p00054800	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00131p00055770	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00138p00069300	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
Adi_g060878	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g115514	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03826	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11930	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07461	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g08833	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g11890	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g70386	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene37665.t2	Aspi01Gene37665	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene46206.t1	Aspi01Gene46206	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0006.g009681	No alias	not classified & original description: CDS=140-2005	0.04	OrthoFinder output from all 47 species
Azfi_s0064.g035514	No alias	not classified & original description: CDS=742-2646	0.04	OrthoFinder output from all 47 species
Cba_g05260	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22564	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34443	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G014100.1	Ceric.20G014100	not classified & original description: pacid=50566742...	0.04	OrthoFinder output from all 47 species
Ceric.25G053000.1	Ceric.25G053000	not classified & original description: pacid=50593159...	0.04	OrthoFinder output from all 47 species
Dac_g13842	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08174	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g51927	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02735	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01003764001	No alias	No description available	0.04	OrthoFinder output from all 47 species
GSVIVT01031903001	No alias	No description available	0.04	OrthoFinder output from all 47 species
Gb_16429	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os03g13130.2	LOC_Os03g13130	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os06g49060.1	LOC_Os06g49060	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os07g03140.1	LOC_Os07g03140	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os09g28850.1	LOC_Os09g28850	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os09g32010.1	LOC_Os09g32010	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Len_g45794	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g55482	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g59225	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g39853	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Mp7g01740.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g21403	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g21647	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g31356	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03702	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g07704	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g09324	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g13997	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14919	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05228	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17419	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g62402	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020165	No alias	not classified & original description: CDS=1-2094	0.03	OrthoFinder output from all 47 species
Sam_g09691	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g30130	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo74798	No alias	No description available	0.03	OrthoFinder output from all 47 species
Solyc01g109270.3.1	Solyc01g109270	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc04g082970.4.1	Solyc04g082970	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Spa_g26671	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g51544	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g29415	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003813_P004	Zm00001e003813	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Zm00001e005808_P001	Zm00001e005808	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Zm00001e013087_P001	Zm00001e013087	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e034560_P003	Zm00001e034560	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	IEP	HCCA
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009798	axis specification	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009942	longitudinal axis specification	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025757	MIP1_Leuzipper	19	96
IPR006869	DUF547	336	468

External Links

No external refs found!

AT3G13000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation