AT3G12340

Description : FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Gene families : OG0000169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G12340

Target	Alias	Description	ECC score	Gene Family Method
Adi_g113483	ATFKBP53, FKBP53	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.02	OrthoFinder output from all 47 species
Aop_g63735	ATFKBP53, FKBP53	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.03	OrthoFinder output from all 47 species
Ceric.14G052500.1	ATFKBP53,...	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000113.23	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000792.18	FKBP62, ROF1, ATFKBP62	Protein modification.protein folding and quality...	0.01	OrthoFinder output from all 47 species
Cre14.g616100	ATFKBP53, FKBP53	Protein modification.protein folding and quality...	0.03	OrthoFinder output from all 47 species
Ehy_g15501	ATFKBP53, FKBP53	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.04	OrthoFinder output from all 47 species
Mp5g18010.1	ATFKBP53, FKBP53	protein folding catalyst (FKBP)	0.08	OrthoFinder output from all 47 species
Msp_g24342	ATFKBP53, FKBP53	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.02	OrthoFinder output from all 47 species
Pir_g04203	ATFKBP53, FKBP53	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.04	OrthoFinder output from all 47 species
Sam_g15925	No alias	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.03	OrthoFinder output from all 47 species
Sam_g37835	No alias	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.03	OrthoFinder output from all 47 species
Solyc03g007170.3.1	ATFKBP53,...	protein folding catalyst (FKBP)	0.05	OrthoFinder output from all 47 species
Spa_g24904	ATFKBP53, FKBP53	peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &...	0.04	OrthoFinder output from all 47 species
Zm00001e033723_P005	ATFKBP53,...	protein folding catalyst (FKBP)	0.02	OrthoFinder output from all 47 species
Zm00001e040959_P001	ATFKBP53,...	protein folding catalyst (FKBP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IBA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	ISS	Interproscan
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IBA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005527	macrolide binding	None	Extended
MF	GO:0005528	FK506 binding	ISS	Interproscan
MF	GO:0005528	FK506 binding	IBA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006312	mitotic recombination	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009543	chloroplast thylakoid lumen	ISS	Interproscan
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IBA	Interproscan
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016859	cis-trans isomerase activity	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018208	peptidyl-proline modification	IBA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0031977	thylakoid lumen	None	Extended
CC	GO:0031978	plastid thylakoid lumen	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0033218	amide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042991	obsolete transcription factor import into nucleus	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010219	regulation of vernalization response	IEP	HCCA
BP	GO:0010220	positive regulation of vernalization response	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016093	polyprenol metabolic process	IEP	HCCA
BP	GO:0016094	polyprenol biosynthetic process	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019348	dolichol metabolic process	IEP	HCCA
BP	GO:0019408	dolichol biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0080157	regulation of plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001179	PPIase_FKBP_dom	406	494

External Links

No external refs found!

AT3G12340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation