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  5. AT3G11130

AT3G11130


Description : Clathrin, heavy chain


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G11130
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00168430 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.12 OrthoFinder output from all 47 species
Adi_g011980 No alias heavy chain of clathrin triskelion & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g20290 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Als_g14456 No alias heavy chain of clathrin triskelion & original description: none 0.08 OrthoFinder output from all 47 species
Als_g61224 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02408 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g08144 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene19604.t1 Aspi01Gene19604 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0021.g015746 No alias heavy chain of clathrin triskelion & original... 0.1 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.11 OrthoFinder output from all 47 species
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g27950 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g27951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.08 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.11 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Cre02.g101400 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Dac_g02387 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.16 OrthoFinder output from all 47 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g06146 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.09 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.18 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.17 OrthoFinder output from all 47 species
Gb_33029 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.14 OrthoFinder output from all 47 species
LOC_Os11g01380.1 LOC_Os11g01380 heavy chain of clathrin triskelion 0.19 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.15 OrthoFinder output from all 47 species
Len_g11569 No alias heavy chain of clathrin triskelion & original description: none 0.11 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.12 OrthoFinder output from all 47 species
MA_47260g0010 No alias Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica... 0.1 OrthoFinder output from all 47 species
MA_528g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.13 OrthoFinder output from all 47 species
MA_5992036g0010 No alias Clathrin heavy chain 1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_641648g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.09 OrthoFinder output from all 47 species
MA_8471497g0010 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.09 OrthoFinder output from all 47 species
Msp_g26122 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g16662 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c2_3220V3.1 Pp3c2_3220 Clathrin, heavy chain 0.02 OrthoFinder output from all 47 species
Ppi_g29284 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.13 OrthoFinder output from all 47 species
Solyc03g096000.3.1 Solyc03g096000 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.15 OrthoFinder output from all 47 species
Solyc06g051310.3.1 Solyc06g051310 heavy chain of clathrin triskelion 0.13 OrthoFinder output from all 47 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.21 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.21 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.19 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006897 endocytosis IMP Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004430 1-phosphatidylinositol 4-kinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0010191 mucilage metabolic process IEP HCCA
BP GO:0010192 mucilage biosynthetic process IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010235 guard mother cell cytokinesis IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0030742 GTP-dependent protein binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP HCCA
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048468 cell development IEP HCCA
CC GO:0048471 perinuclear region of cytoplasm IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051211 anisotropic cell growth IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
MF GO:0052742 phosphatidylinositol kinase activity IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070273 phosphatidylinositol-4-phosphate binding IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090436 leaf pavement cell development IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 154 197
IPR022365 Clathrin_H-chain_propeller_rpt 20 56
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR000547 Clathrin_H-chain/VPS_repeat 1145 1281
IPR000547 Clathrin_H-chain/VPS_repeat 1439 1579
IPR000547 Clathrin_H-chain/VPS_repeat 701 840
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1432
IPR000547 Clathrin_H-chain/VPS_repeat 557 690
IPR000547 Clathrin_H-chain/VPS_repeat 850 983
IPR000547 Clathrin_H-chain/VPS_repeat 993 1132
No external refs found!