AT3G10640 (VPS60.1)

Aliases : VPS60.1

Description : SNF7 family protein

Gene families : OG0002554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002554_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10640
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
Adi_g065498	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.02	OrthoFinder output from all 47 species
Aop_g04144	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.05	OrthoFinder output from all 47 species
Ceric.02G044700.1	VPS60.1, Ceric.02G044700	associated protein of ESCRT-III complex *(VPS60) &...	0.05	OrthoFinder output from all 47 species
Cre13.g577950	VPS60.1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.02	OrthoFinder output from all 47 species
Dac_g04524	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.03	OrthoFinder output from all 47 species
Dac_g08377	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.02	OrthoFinder output from all 47 species
Ehy_g25561	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.03	OrthoFinder output from all 47 species
Gb_11898	VPS60.1	VPS60 associated protein of ESCRT-III complex	0.02	OrthoFinder output from all 47 species
Msp_g03877	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.04	OrthoFinder output from all 47 species
Sam_g11205	No alias	associated protein of ESCRT-III complex *(VPS60) &...	0.03	OrthoFinder output from all 47 species
Solyc11g006500.2.1	VPS60.1, Solyc11g006500	VPS60 associated protein of ESCRT-III complex	0.05	OrthoFinder output from all 47 species
Spa_g06957	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.03	OrthoFinder output from all 47 species
Spa_g10909	VPS60.1	associated protein of ESCRT-III complex *(VPS60) &...	0.05	OrthoFinder output from all 47 species
Zm00001e029711_P001	VPS60.1, Zm00001e029711	VPS60 associated protein of ESCRT-III complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009738	abscisic acid-activated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009863	salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	ISS	Interproscan
BP	GO:0030968	endoplasmic reticulum unfolded protein response	RCA	Interproscan
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0035556	intracellular signal transduction	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000815	ESCRT III complex	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
BP	GO:0007005	mitochondrion organization	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016559	peroxisome fission	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019322	pentose biosynthetic process	IEP	HCCA
BP	GO:0019566	arabinose metabolic process	IEP	HCCA
BP	GO:0019567	arabinose biosynthetic process	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
CC	GO:0036452	ESCRT complex	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
MF	GO:0050373	UDP-arabinose 4-epimerase activity	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005024	Snf7_fam	12	209

External Links

No external refs found!

AT3G10640 (VPS60.1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation