AT3G10640 (VPS60.1)


Aliases : VPS60.1

Description : SNF7 family protein


Gene families : OG0002554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002554_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G10640
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Adi_g065498 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.02 OrthoFinder output from all 47 species
Aop_g04144 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.05 OrthoFinder output from all 47 species
Ceric.02G044700.1 VPS60.1, Ceric.02G044700 associated protein of ESCRT-III complex *(VPS60) &... 0.05 OrthoFinder output from all 47 species
Cre13.g577950 VPS60.1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
Dac_g04524 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.03 OrthoFinder output from all 47 species
Dac_g08377 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.02 OrthoFinder output from all 47 species
Ehy_g25561 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.03 OrthoFinder output from all 47 species
Gb_11898 VPS60.1 VPS60 associated protein of ESCRT-III complex 0.02 OrthoFinder output from all 47 species
Msp_g03877 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.04 OrthoFinder output from all 47 species
Sam_g11205 No alias associated protein of ESCRT-III complex *(VPS60) &... 0.03 OrthoFinder output from all 47 species
Solyc11g006500.2.1 VPS60.1, Solyc11g006500 VPS60 associated protein of ESCRT-III complex 0.05 OrthoFinder output from all 47 species
Spa_g06957 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.03 OrthoFinder output from all 47 species
Spa_g10909 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.05 OrthoFinder output from all 47 species
Zm00001e029711_P001 VPS60.1, Zm00001e029711 VPS60 associated protein of ESCRT-III complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
BP GO:0009723 response to ethylene RCA Interproscan
BP GO:0009738 abscisic acid-activated signaling pathway RCA Interproscan
BP GO:0009863 salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0016192 vesicle-mediated transport ISS Interproscan
BP GO:0030968 endoplasmic reticulum unfolded protein response RCA Interproscan
BP GO:0035556 intracellular signal transduction RCA Interproscan
BP GO:0050832 defense response to fungus RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000815 ESCRT III complex IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019322 pentose biosynthetic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
BP GO:0019567 arabinose biosynthetic process IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
MF GO:0050373 UDP-arabinose 4-epimerase activity IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 12 209
No external refs found!