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AT3G09620


Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G09620

Target Alias Description ECC score Gene Family Method Actions
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008460 dTDP-glucose 4,6-dehydratase activity IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019305 dTDP-rhamnose biosynthetic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0046383 dTDP-rhamnose metabolic process IEP HCCA
MF GO:0048040 UDP-glucuronate decarboxylase activity IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 652 709
IPR011545 DEAD/DEAH_box_helicase_dom 421 594
No external refs found!