AT3G08930

Description : LMBR1-like membrane protein

Gene families : OG0004233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004233_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G08930

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00244850	evm_27.TU.AmTr_v1...	LIMR family protein At3g08930 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Aev_g02363	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g46989	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g72185	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cre01.g023400	No alias	LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
LOC_Os06g03760.1	LOC_Os06g03760	LIMR family protein Os06g0128200 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Len_g59363	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g13114	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15699	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g005310.3.1	Solyc09g005310	LIMR family protein At5g01460 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007033	vacuole organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0001932	regulation of protein phosphorylation	IEP	HCCA
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	HCCA
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004758	serine C-palmitoyltransferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005881	cytoplasmic microtubule	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006469	negative regulation of protein kinase activity	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006670	sphingosine metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006995	cellular response to nitrogen starvation	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007602	phototransduction	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
MF	GO:0008022	protein C-terminus binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
CC	GO:0009574	preprophase band	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009585	red, far-red light phototransduction	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009649	entrainment of circadian clock	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
CC	GO:0010005	cortical microtubule, transverse to long axis	IEP	HCCA
BP	GO:0010031	circumnutation	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010440	stomatal lineage progression	IEP	HCCA
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016408	C-acyltransferase activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016454	C-palmitoyltransferase activity	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033673	negative regulation of kinase activity	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0040020	regulation of meiotic nuclear division	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0042326	negative regulation of phosphorylation	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0043549	regulation of kinase activity	IEP	HCCA
BP	GO:0043562	cellular response to nitrogen levels	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045859	regulation of protein kinase activity	IEP	HCCA
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046512	sphingosine biosynthetic process	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050879	multicellular organismal movement	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051348	negative regulation of transferase activity	IEP	HCCA
BP	GO:0051445	regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
CC	GO:0055028	cortical microtubule	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0071901	negative regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006876	LMBR1-like_membr_prot	277	487
IPR006876	LMBR1-like_membr_prot	9	274

External Links

No external refs found!

AT3G08930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation