AT3G08900 (RGP3, RGP)

Aliases : RGP3, RGP

Description : reversibly glycosylated polypeptide 3

Gene families : OG0001238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G08900
Cluster	HCCA: Cluster_72

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00162620	ATRGP1, RGP1,...	Carbohydrate metabolism.nucleotide sugar...	0.03	OrthoFinder output from all 47 species
Aob_g06394	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22243	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene57355.t1	ATRGP1, RGP1,...	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01869	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01008552001	ATRGP1, RGP1	Carbohydrate metabolism.nucleotide sugar...	0.07	OrthoFinder output from all 47 species
GSVIVT01036557001	RGP3, RGP	Carbohydrate metabolism.nucleotide sugar...	0.04	OrthoFinder output from all 47 species
Gb_31191	RGP3, RGP	UDP-L-arabinose mutase	0.06	OrthoFinder output from all 47 species
Len_g04222	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g04223	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05869	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g34861	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.04	OrthoFinder output from all 47 species
MA_162652g0010	RGP3, RGP	UDP-L-arabinose mutase	0.03	OrthoFinder output from all 47 species
Mp2g10790.1	RGP3, RGP	UDP-L-arabinose mutase	0.02	OrthoFinder output from all 47 species
Msp_g01532	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g08739	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g28090	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g05889	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
Smo76446	RGP2, ATRGP2	Carbohydrate metabolism.nucleotide sugar...	0.04	OrthoFinder output from all 47 species
Solyc02g089170.4.1	ATRGP1, RGP1,...	UDP-L-arabinose mutase	0.04	OrthoFinder output from all 47 species
Solyc03g019750.3.1	RGP3, RGP, Solyc03g019750	UDP-L-arabinose mutase	0.05	OrthoFinder output from all 47 species
Solyc03g070390.3.1	ATRGP1, RGP1,...	UDP-L-arabinose mutase	0.06	OrthoFinder output from all 47 species
Solyc05g012070.3.1	ATRGP1, RGP1,...	UDP-L-arabinose mutase	0.05	OrthoFinder output from all 47 species
Spa_g09075	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009225	nucleotide-sugar metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0033356	UDP-L-arabinose metabolic process	IDA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0052691	UDP-arabinopyranose mutase activity	IDA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0004108	citrate (Si)-synthase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0015020	glucuronosyltransferase activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
CC	GO:0016602	CCAAT-binding factor complex	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
CC	GO:0031012	extracellular matrix	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0036440	citrate synthase activity	IEP	HCCA
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0048468	cell development	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	HCCA
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	HCCA
MF	GO:0080116	glucuronoxylan glucuronosyltransferase activity	IEP	HCCA
BP	GO:0080147	root hair cell development	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR037595	RGP_fam	14	349

External Links

No external refs found!

AT3G08900 (RGP3, RGP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation